Global optimization by basin-hopping and the lowest energy structures of Lennard-Jones clusters containing up to 110 atoms DJ Wales, JPK Doye The Journal of Physical Chemistry A 101 (28), 5111-5116, 1997 | 3614 | 1997 |
On the biophysics and kinetics of toehold-mediated DNA strand displacement N Srinivas, TE Ouldridge, P Šulc, JM Schaeffer, B Yurke, AA Louis, ... Nucleic acids research 41 (22), 10641-10658, 2013 | 528 | 2013 |
Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model TE Ouldridge, AA Louis, JPK Doye The Journal of chemical physics 134 (8), 2011 | 504 | 2011 |
Global minima for transition metal clusters described by Sutton–Chen potentials JPK Doye, DJ Wales New journal of chemistry 22 (7), 733-744, 1998 | 501 | 1998 |
The effect of the range of the potential on the structures of clusters JPK Doye, DJ Wales, RS Berry The Journal of chemical physics 103 (10), 4234-4249, 1995 | 482 | 1995 |
The double-funnel energy landscape of the 38-atom Lennard-Jones cluster JPK Doye, MA Miller, DJ Wales The Journal of Chemical Physics 110 (14), 6896-6906, 1999 | 348 | 1999 |
Energy landscapes: from clusters to biomolecules DJ Wales, JPK Doye, MA Miller, PN Mortenson, TR Walsh Advances in Chemical Physics 115, 1-111, 2000 | 342 | 2000 |
Sequence-dependent thermodynamics of a coarse-grained DNA model P Šulc, F Romano, TE Ouldridge, L Rovigatti, JPK Doye, AA Louis The Journal of chemical physics 137 (13), 2012 | 339 | 2012 |
Introducing improved structural properties and salt dependence into a coarse-grained model of DNA BEK Snodin, F Randisi, M Mosayebi, P Šulc, JS Schreck, F Romano, ... The Journal of chemical physics 142 (23), 2015 | 329 | 2015 |
The Cambridge cluster database DJ Wales, JPK Doye, A Dullweber, MP Hodges, FY Naumkin, F Calvo, ... | 325 | 2001 |
Structural consequences of the range of the interatomic potential a menagerie of clusters JPK Doye, DJ Wales Journal of the Chemical Society, Faraday Transactions 93 (24), 4233-4243, 1997 | 317 | 1997 |
Evolution of the potential energy surface with size for Lennard-Jones clusters JPK Doye, MA Miller, DJ Wales The Journal of Chemical Physics 111 (18), 8417-8428, 1999 | 287 | 1999 |
Thermodynamics of global optimization JPK Doye, DJ Wales Physical review letters 80 (7), 1357, 1998 | 283 | 1998 |
Network topology of a potential energy landscape: A static scale-free network JPK Doye Physical review letters 88 (23), 238701, 2002 | 262 | 2002 |
DNA hybridization kinetics: zippering, internal displacement and sequence dependence TE Ouldridge, P Šulc, F Romano, JPK Doye, AA Louis Nucleic acids research 41 (19), 8886-8895, 2013 | 258 | 2013 |
Thermodynamics and the global optimization of Lennard-Jones clusters JPK Doye, DJ Wales, MA Miller The Journal of Chemical Physics 109 (19), 8143-8153, 1998 | 236 | 1998 |
Reversible self-assembly of patchy particles into monodisperse icosahedral clusters AW Wilber, JPK Doye, AA Louis, EG Noya, MA Miller, P Wong The Journal of chemical physics 127 (8), 2007 | 232 | 2007 |
Saddle points and dynamics of Lennard-Jones clusters, solids, and supercooled liquids JPK Doye, DJ Wales The Journal of Chemical Physics 116 (9), 3777-3788, 2002 | 230 | 2002 |
Tetrahedral global minimum for the 98-atom Lennard-Jones cluster RH Leary, JPK Doye Physical Review E 60 (6), R6320, 1999 | 226 | 1999 |
Coarse-graining DNA for simulations of DNA nanotechnology JPK Doye, TE Ouldridge, AA Louis, F Romano, P Šulc, C Matek, ... Physical Chemistry Chemical Physics 15 (47), 20395-20414, 2013 | 223 | 2013 |