| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 1597 | 2020 |
| Multi-platform discovery of haplotype-resolved structural variation in human genomes MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ... Nature communications 10 (1), 1784, 2019 | 764 | 2019 |
| Analyses of non-coding somatic drivers in 2,658 cancer whole genomes E Rheinbay, MM Nielsen, F Abascal, JA Wala, O Shapira, G Tiao, ... Nature 578 (7793), 102-111, 2020 | 518 | 2020 |
| The real cost of sequencing: scaling computation to keep pace with data generation P Muir, S Li, S Lou, D Wang, DJ Spakowicz, L Salichos, J Zhang, ... Genome biology 17, 1-9, 2016 | 491 | 2016 |
| Genomic basis for RNA alterations in cancer PCAWG Transcriptome Core Group Calabrese Claudia 2 Davidson Natalie R. 3 4 5 ... Nature 578 (7793), 129-136, 2020 | 280 | 2020 |
| Next-generation sequencing to diagnose suspected genetic disorders DR Adams, CM Eng New England Journal of Medicine 379 (14), 1353-1362, 2018 | 279 | 2018 |
| Passenger mutations in more than 2,500 cancer genomes: overall molecular functional impact and consequences S Kumar, J Warrell, S Li, PD McGillivray, W Meyerson, L Salichos, ... Cell 180 (5), 915-927. e16, 2020 | 121 | 2020 |
| An integrative ENCODE resource for cancer genomics J Zhang, D Lee, V Dhiman, P Jiang, J Xu, P McGillivray, H Yang, J Liu, ... Nature communications 11 (1), 3696, 2020 | 113 | 2020 |
| Human-specific tandem repeat expansion and differential gene expression during primate evolution A Sulovari, R Li, PA Audano, D Porubsky, MR Vollger, GA Logsdon, ... Proceedings of the National Academy of Sciences 116 (46), 23243-23253, 2019 | 98 | 2019 |
| Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms A Abyzov, S Li, DR Kim, M Mohiyuddin, AM Stütz, NF Parrish, XJ Mu, ... Nature communications 6 (1), 7256, 2015 | 96 | 2015 |
| Predicting the frequencies of drug side effects D Galeano, S Li, M Gerstein, A Paccanaro Nature communications 11 (1), 4575, 2020 | 80 | 2020 |
| Genomics and data science: an application within an umbrella FCP Navarro, H Mohsen, C Yan, S Li, M Gu, W Meyerson, M Gerstein Genome biology 20, 1-11, 2019 | 78 | 2019 |
| Identifying allosteric hotspots with dynamics: application to inter-and intra-species conservation D Clarke, A Sethi, S Li, S Kumar, RWF Chang, J Chen, M Gerstein Structure 24 (5), 826-837, 2016 | 55 | 2016 |
| Whole-genome analysis of papillary kidney cancer finds significant noncoding alterations S Li, BM Shuch, MB Gerstein PLoS genetics 13 (3), e1006685, 2017 | 46 | 2017 |
| Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples MH Bailey, WU Meyerson, LJ Dursi, LB Wang, G Dong, WW Liang, ... Nature communications 11 (1), 4748, 2020 | 41 | 2020 |
| Deep profiling of protease substrate specificity enabled by dual random and scanned human proteome substrate phage libraries J Zhou, S Li, KK Leung, B O’Donovan, JY Zou, JL DeRisi, JA Wells Proceedings of the National Academy of Sciences 117 (41), 25464-25475, 2020 | 38 | 2020 |
| Using sigLASSO to optimize cancer mutation signatures jointly with sampling likelihood S Li, FW Crawford, MB Gerstein Nature communications 11 (1), 3575, 2020 | 34 | 2020 |
| Landscape and variation of novel retroduplications in 26 human populations Y Zhang, S Li, A Abyzov, MB Gerstein PLoS computational biology 13 (6), e1005567, 2017 | 30 | 2017 |
| Estimation of the carrier frequency of fumarate hydratase alterations and implications for kidney cancer risk in hereditary leiomyomatosis and renal cancer B Shuch, S Li, H Risch, RS Bindra, PD McGillivray, M Gerstein Cancer 126 (16), 3657-3666, 2020 | 27 | 2020 |
| Multi-platform discovery of haplotype-resolved structural variation in human genomes. Nat. Commun. 10, 1784 MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ... | 20 | 2019 |
