Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells F Buettner, KN Natarajan, FP Casale, V Proserpio, A Scialdone, FJ Theis, ... Nature biotechnology 33 (2), 155-160, 2015 | 1240 | 2015 |
Adipocyte accumulation in the bone marrow during obesity and aging impairs stem cell-based hematopoietic and bone regeneration TH Ambrosi, A Scialdone, A Graja, S Gohlke, AM Jank, C Bocian, L Woelk, ... Cell stem cell 20 (6), 771-784. e6, 2017 | 700 | 2017 |
Complex multi-enhancer contacts captured by genome architecture mapping RA Beagrie, A Scialdone, M Schueler, DCA Kraemer, M Chotalia, SQ Xie, ... Nature 543 (7646), 519-524, 2017 | 696 | 2017 |
Normalizing single-cell RNA sequencing data: challenges and opportunities CA Vallejos, D Risso, A Scialdone, S Dudoit, JC Marioni Nature methods 14 (6), 565-571, 2017 | 454 | 2017 |
Heterogeneity in Oct4 and Sox2 targets biases cell fate in 4-cell mouse embryos M Goolam, A Scialdone, SJL Graham, IC Macaulay, A Jedrusik, ... Cell 165 (1), 61-74, 2016 | 449 | 2016 |
Computational assignment of cell-cycle stage from single-cell transcriptome data A Scialdone, KN Natarajan, LR Saraiva, V Proserpio, SA Teichmann, ... Methods 85, 54-61, 2015 | 382 | 2015 |
Single-cell landscape of transcriptional heterogeneity and cell fate decisions during mouse early gastrulation H Mohammed, I Hernando-Herraez, A Savino, A Scialdone, I Macaulay, ... Cell reports 20 (5), 1215-1228, 2017 | 316 | 2017 |
Single-cell transcriptomic characterization of a gastrulating human embryo RCV Tyser, E Mahammadov, S Nakanoh, L Vallier, A Scialdone, ... Nature 600 (7888), 285-289, 2021 | 312* | 2021 |
Resolving early mesoderm diversification through single-cell expression profiling A Scialdone, Y Tanaka, W Jawaid, V Moignard, NK Wilson, IC Macaulay, ... Nature 535 (7611), 289-293, 2016 | 298 | 2016 |
Using single‐cell genomics to understand developmental processes and cell fate decisions JA Griffiths, A Scialdone, JC Marioni Molecular systems biology 14 (4), e8046, 2018 | 240 | 2018 |
Pluripotent state transitions coordinate morphogenesis in mouse and human embryos MN Shahbazi, A Scialdone, N Skorupska, A Weberling, G Recher, M Zhu, ... Nature 552 (7684), 239-243, 2017 | 226 | 2017 |
Arabidopsis plants perform arithmetic division to prevent starvation at night A Scialdone, ST Mugford, D Feike, A Skeffington, P Borrill, A Graf, ... Elife 2, e00669, 2013 | 184 | 2013 |
Epstein–Barr virus reprograms human B lymphocytes immediately in the prelatent phase of infection P Mrozek-Gorska, A Buschle, D Pich, T Schwarzmayr, R Fechtner, ... Proceedings of the National Academy of Sciences 116 (32), 16046-16055, 2019 | 170 | 2019 |
Hierarchical deconstruction of mouse olfactory sensory neurons: from whole mucosa to single-cell RNA-seq LR Saraiva, X Ibarra-Soria, M Khan, M Omura, A Scialdone, P Mombaerts, ... Scientific reports 5 (1), 18178, 2015 | 166 | 2015 |
Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation X Ibarra-Soria, W Jawaid, B Pijuan-Sala, V Ladopoulos, A Scialdone, ... Nature cell biology 20 (2), 127-134, 2018 | 120 | 2018 |
Characterization of a common progenitor pool of the epicardium and myocardium RCV Tyser, X Ibarra-Soria, K McDole, S Arcot Jayaram, J Godwin, ... Science 371 (6533), eabb2986, 2021 | 110 | 2021 |
Cell competition acts as a purifying selection to eliminate cells with mitochondrial defects during early mouse development A Lima, G Lubatti, J Burgstaller, D Hu, A Green, A Di Gregorio, T Zawadzki, ... Nature Metabolism 3, 1091–1108, 2021 | 50* | 2021 |
DNA replication fork speed underlies cell fate changes and promotes reprogramming T Nakatani, J Lin, F Ji, A Ettinger, J Pontabry, M Tokoro, ... Nature Genetics 54 (3), 318-327, 2022 | 49 | 2022 |
Retinoic acid signaling is critical during the totipotency window in early mammalian development A Iturbide, ML Ruiz Tejada Segura, C Noll, K Schorpp, I Rothenaigner, ... Nature structural & molecular biology 28 (6), 521-532, 2021 | 48 | 2021 |
How plants manage food reserves at night: quantitative models and open questions A Scialdone, M Howard Frontiers in Plant Science 6, 204, 2015 | 43 | 2015 |