Physical separation of haplotypes in dikaryons allows benchmarking of phasing accuracy in Nanopore and HiFi assemblies with Hi-C data H Duan, AW Jones, T Hewitt, A Mackenzie, Y Hu, A Sharp, D Lewis, ... Genome biology 23 (1), 84, 2022 | 49 | 2022 |
Pathogen detection and microbiome analysis of infected wheat using a portable DNA sequencer Y Hu, GS Green, AW Milgate, EA Stone, JP Rathjen, B Schwessinger Phytobiomes journal 3 (2), 92-101, 2019 | 46 | 2019 |
Long-read sequencing based clinical metagenomics for the detection and confirmation of Pneumocystis jirovecii directly from clinical specimens: A paradigm shift … L Irinyi, Y Hu, MTV Hoang, L Pasic, C Halliday, M Jayawardena, I Basu, ... Medical Mycology 58 (5), 650-660, 2020 | 34 | 2020 |
The stem rust fungus Puccinia graminis f. sp. tritici induces centromeric small RNAs during late infection that are associated with genome-wide DNA methylation J Sperschneider, AW Jones, J Nasim, B Xu, S Jacques, C Zhong, ... BMC biology 19, 1-25, 2021 | 27 | 2021 |
Proteins released into the plant apoplast by the obligate parasitic protist Albugo selectively repress phyllosphere‐associated bacteria D Gómez‐Pérez, M Schmid, V Chaudhry, Y Hu, A Velic, B Maček, J Ruhe, ... New Phytologist, 2023 | 17 | 2023 |
Long-reads based metagenomics in clinical diagnosis with a special focus on fungal infections MTV Hoang, L Irinyi, Y Hu, B Schwessinger, W Meyer Frontiers in Microbiology, 4047, 2022 | 17 | 2022 |
A Chromosome Scale Assembly of an Australian Puccinia striiformis f. sp. tritici Isolate of the PstS1 Lineage B Schwessinger, A Jones, M Albekaa, Y Hu, A Mackenzie, R Tam, ... Molecular Plant-Microbe Interactions 35 (3), 293-296, 2022 | 16 | 2022 |
Uncovering the microbiome of invasive sympatric European brown hares and European rabbits in Australia S Shanmuganandam, Y Hu, T Strive, B Schwessinger, RN Hall PeerJ 8, e9564, 2020 | 12 | 2020 |
Blurred lines: integrating emerging technologies to advance plant biosecurity Y Hu, S Wilson, B Schwessinger, JP Rathjen Current Opinion in Plant Biology 56, 127-134, 2020 | 12 | 2020 |
Inferring species compositions of complex fungal communities from long-and short-read sequence data Y Hu, L Irinyi, MTV Hoang, T Eenjes, A Graetz, EA Stone, W Meyer, ... Mbio 13 (2), e02444-21, 2022 | 7 | 2022 |
Linked machine learning classifiers improve species classification of fungi when using error-prone long-reads on extended metabarcodes T Eenjes, Y Hu, L Irinyi, MT Vi Hoang, LM Smith, CC Linde, AW Milgate, ... bioRxiv, 2021.05. 01.442223, 2021 | 2 | 2021 |
Biotic interactions shape infection outcomes in Arabidopsis M Mahmoudi, J Almario, Y Hu, LM Tenzer, K Nieselt, E Kemen bioRxiv, 2024.10. 25.620230, 2024 | | 2024 |
The 1001G+ project: A curated collection of Arabidopsis thaliana long-read genome assemblies to advance plant research CC Alonso-Blanco, H Ashkenazy, P Baduel, Z Bao, C Becker, E Caillieux, ... bioRxiv, 2024.12. 23.629943, 2024 | | 2024 |
Pathogen detection and microbial community compositions during fungal infections Y Hu PQDT-Global, 2021 | | 2021 |
Pathogen Detection and the Role of Microbial Communities in the Phyllosphere during Fungal Infection of Wheat Y Hu, G Green, AW Milgate, L Irinyi, W Meyer, E Stone, JP Rathjen, ... Plant and Animal Genome XXVIII Conference (January 11-15, 2020), 2020 | | 2020 |
Pathogen detection and beyond: Development and application of new sequence-based methods for characterisation of real-world microbial communities Y Hu, G Green, A Milgate, L Irinyi, T Eenjes, W Meyer, E Stone, J Rathjen, ... 2019 IS-MPMI XVIII Congress, 2019 | | 2019 |
Global Transcriptome Changes During Hyperparasitic Growth of a Novel Penicillium Coffeae Isolate on the Wheat Stripe Rust Fungus, Puccinia Striiformis F. Sp. Tritici J Wess, Y Hu, S Periyannan, A Jones Sp. Tritici, 0 | | |