| HMMER web server: 2015 update RD Finn, J Clements, W Arndt, BL Miller, TJ Wheeler, F Schreiber, ... Nucleic acids research 43 (W1), W30-W38, 2015 | 900 | 2015 |
| nhmmer: DNA homology search with profile HMMs TJ Wheeler, SR Eddy Bioinformatics 29 (19), 2487-2489, 2013 | 756 | 2013 |
| The Dfam database of repetitive DNA families R Hubley, RD Finn, J Clements, SR Eddy, TA Jones, W Bao, AFA Smit, ... Nucleic acids research 44 (D1), D81-D89, 2016 | 631 | 2016 |
| Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models TJ Wheeler, J Clements, RD Finn BMC Bioinformatics 15 (1), 7, 2014 | 363 | 2014 |
| The Dfam community resource of transposable element families, sequence models, and genome annotations J Storer, R Hubley, J Rosen, TJ Wheeler, AF Smit Mobile DNA 12, 1-14, 2021 | 362 | 2021 |
| Multiple alignment by aligning alignments TJ Wheeler, JD Kececioglu Bioinformatics 23 (13), i559-i568, 2007 | 302 | 2007 |
| Dfam: a database of repetitive DNA based on profile hidden Markov models TJ Wheeler, J Clements, SR Eddy, R Hubley, TA Jones, J Jurka, AFA Smit, ... Nucleic acids research 41 (D1), D70-D82, 2012 | 278 | 2012 |
| Complete genomic and epigenetic maps of human centromeres N Altemose, GA Logsdon, AV Bzikadze, P Sidhwani, SA Langley, ... Science 376 (6588), eabl4178, 2022 | 272 | 2022 |
| 15 years of PhosphoSitePlus®: integrating post-translationally modified sites, disease variants and isoforms PV Hornbeck, JM Kornhauser, V Latham, B Murray, V Nandhikonda, ... Nucleic acids research 47 (D1), D433-D441, 2019 | 238 | 2019 |
| From telomere to telomere: The transcriptional and epigenetic state of human repeat elements SJ Hoyt, JM Storer, GA Hartley, PGS Grady, A Gershman, LG de Lima, ... Science 376 (6588), eabk3112, 2022 | 196 | 2022 |
| Large-scale neighbor-joining with NINJA TJ Wheeler International Workshop on Algorithms in Bioinformatics, 375-389, 2009 | 112 | 2009 |
| A call for benchmarking transposable element annotation methods DR Hoen, G Hickey, G Bourque, J Casacuberta, R Cordaux, C Feschotte, ... Mobile DNA 6 (1), 1-9, 2015 | 94 | 2015 |
| Pf Bacteriophage and Their Impact on Pseudomonas Virulence, Mammalian Immunity, and Chronic Infections PR Secor, EB Burgener, M Kinnersley, LK Jennings, V Roman-Cruz, ... Frontiers in Immunology 11, 2020 | 83 | 2020 |
| Complete nucleomorph genome sequence of the nonphotosynthetic alga Cryptomonas paramecium reveals a core nucleomorph gene set G Tanifuji, NT Onodera, TJ Wheeler, M Dlutek, N Donaher, JM Archibald Genome biology and evolution 3, 44-54, 2011 | 76 | 2011 |
| Integration of protein phosphorylation, acetylation, and methylation data sets to outline lung cancer signaling networks M Grimes, B Hall, L Foltz, T Levy, K Rikova, J Gaiser, W Cook, E Smirnova, ... Science signaling 11 (531), eaaq1087, 2018 | 54 | 2018 |
| ULTRA: A Model Based Tool to Detect Tandem Repeats D Olson, T Wheeler ACM-BCB ’18, 2018 | 26 | 2018 |
| Transposable element orientation bias in the Drosophila melanogaster genome AD Cutter, JM Good, CT Pappas, MA Saunders, DM Starrett, TJ Wheeler Journal of molecular evolution 61 (6), 733-741, 2005 | 26 | 2005 |
| Estimating the Accuracy of Multiple Alignments and its Use in Parameter Advising D DeBlasio, T Wheeler, J Kececioglu Research in Computational Molecular Biology, 45-59, 2012 | 25 | 2012 |
| Adaptive protein evolution and regulatory divergence in Drosophila JM Good, CA Hayden, TJ Wheeler Molecular biology and evolution 23 (6), 1101-1103, 2006 | 24 | 2006 |
| TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation TE Hub Consortium, TA Elliott, T Heitkam, R Hubley, H Quesneville, ... Mobile DNA 12 (1), 16, 2021 | 17 | 2021 |
Sean R. EddyHHMI & Harvard University在 fas.harvard.edu 的电子邮件经过验证
