A survey of k-mer methods and applications in bioinformatics C Moeckel, M Mareboina, MA Konnaris, CSY Chan, I Mouratidis, ... Computational and Structural Biotechnology Journal, 2024 | 15 | 2024 |
Confounding factors impacting microRNA expression in human saliva: methodological and biological considerations R Sullivan, A Montgomery, A Scipioni, P Jhaveri, AT Schmidt, SD Hicks Genes 13 (10), 1874, 2022 | 14 | 2022 |
Harnessing changes in open chromatin determined by ATAC-seq to generate insulin-responsive reporter constructs CB Merrill, AB Montgomery, MA Pabon, AA Shabalin, AR Rodan, ... BMC genomics 23 (1), 399, 2022 | 13 | 2022 |
Utilizing nullomers in cell-free RNA for early cancer detection A Montgomery, GC Tsiatsianis, I Mouratidis, CSY Chan, M Athanasiou, ... Cancer gene therapy, 1-10, 2024 | 10 | 2024 |
Optimized assay for transposase-accessible chromatin by sequencing (ATAC-seq) library preparation from adult Drosophila melanogaster neurons CB Merrill, MA Pabon, AB Montgomery, AR Rodan, A Rothenfluh Scientific reports 12 (1), 6043, 2022 | 9 | 2022 |
The fly liquid-food electroshock assay (FLEA) suggests opposite roles for neuropeptide F in avoidance of bitterness and shock P Mishra, SE Yang, AB Montgomery, AR Reed, AR Rodan, A Rothenfluh BMC biology 19, 1-13, 2021 | 6 | 2021 |
kmerDB: a database encompassing the set of genomic and proteomic sequence information for each species I Mouratidis, FA Baltoumas, N Chantzi, M Patsakis, CSY Chan, ... Computational and Structural Biotechnology Journal 23, 1919-1928, 2024 | 5 | 2024 |
Nucleic quasi-primes: identification of the shortest unique oligonucleotide sequences in a species I Mouratidis, MA Konnaris, N Chantzi, CSY Chan, A Montgomery, ... bioRxiv, 2023.12. 12.571240, 2023 | 4 | 2023 |
The determinants of the rarity of nucleic and peptide short sequences in nature N Chantzi, M Mareboina, MA Konnaris, A Montgomery, M Patsakis, ... NAR Genomics and Bioinformatics 6 (2), lqae029, 2024 | 3 | 2024 |
Iterative assay for transposase-accessible chromatin by sequencing to isolate functionally relevant neuronal subtypes CB Merrill, I Titos, MA Pabon, AB Montgomery, AR Rodan, A Rothenfluh Science Advances 10 (13), eadi4393, 2024 | 2 | 2024 |
2007P Real-world (rw) outcomes to chemoimmunotherapy and biomarker analysis in extensive-stage small cell lung cancer (ES SCLC) E Panagiotou, ME Livanou, A Montgomery, M Mastrogeorgiou, C Moeckel, ... Annals of Oncology 34, S1069, 2023 | 1 | 2023 |
Identification of the shortest species-specific oligonucleotide sequences I Mouratidis, M Konnaris, N Chantzi, CSY Chan, M Patsakis, K Provatas, ... Genome Research, gr. 280070.124, 2025 | | 2025 |
The topography of nullomer-emerging mutations and their relevance to human disease CSY Chan, I Mouratidis, A Montgomery, GC Tsiatsianis, N Chantzi, ... Computational and Structural Biotechnology Journal, 2024 | | 2024 |
Dissecting heritability, environmental risk, and air pollution causal effects using> 50 million individuals in MarketScan D McGuire, H Markus, L Yang, J Xu, A Montgomery, A Berg, Q Li, L Carrel, ... Nature communications 15 (1), 5357, 2024 | | 2024 |
Ribosomal DNA arrays are the most H-DNA rich element in the human genome N Chantzi, M Patsakis, A Nayak, A Montgomery, I Mouratidis, ... bioRxiv, 2024.07. 12.602585, 2024 | | 2024 |
Quadrupia: Derivation of G-quadruplexes for organismal genomes across the tree of life N Chantzi, A Nayak, FA Baltoumas, E Aplakidou, SW Liew, JE Galuh, ... bioRxiv, 2024.07. 09.602008, 2024 | | 2024 |
Eligibility for screening with low-dose CT in a real-world cohort of patients with lung cancer in Greece: A brief report ME Livanou, NK Syrigos, A Montgomery, C Moeckel, E Panagiotou, ... Lung Cancer 186, 107424, 2023 | | 2023 |
Real-world survival outcomes to first-line chemoimmunotherapy and biomarker analysis in extensive-stage small-cell lung cancer E Panagiotou, IA Vathiotis, A Montgomery, C Moeckel, ME Livanou, ... | | 2023 |