Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types T Ryba, I Hiratani, J Lu, M Itoh, M Kulik, J Zhang, TC Schulz, AJ Robins, ... Genome research 20 (6), 761-770, 2010 | 678 | 2010 |
Reactivity of thioredoxin as a protein thiol-disulfide oxidoreductase. Z Cheng, J Zhang, DP Ballou, CH Williams Jr Chemical reviews 111 (9), 5768, 2011 | 134 | 2011 |
Replication timing: a fingerprint for cell identity and pluripotency T Ryba, I Hiratani, T Sasaki, D Battaglia, M Kulik, J Zhang, S Dalton, ... PLoS Comput Biol 7 (10), e1002225, 2011 | 103 | 2011 |
Bayesian inference of protein–protein interactions from biological literature R Chowdhary, J Zhang, JS Liu Bioinformatics 25 (12), 1536-1542, 2009 | 101 | 2009 |
Differentially expressed transcripts and dysregulated signaling pathways and networks in African American breast cancer PA Stewart, J Luks, MD Roycik, QXA Sang, J Zhang PloS one 8 (12), e82460, 2013 | 100 | 2013 |
Modeling Recurrence for Transformer J Hao, X Wang, B Yang, L Wang, J Zhang, Z Tu arXiv preprint arXiv:1904.03092, 2019 | 92 | 2019 |
Differential Nuclease Sensitivity Profiling of Chromatin Reveals Biochemical Footprints Coupled to Gene Expression and Functional DNA Elements in Maize DL Vera, TF Madzima, JD Labonne, MP Alam, GG Hoffman, ... The Plant Cell 26 (10), 3883-3893, 2014 | 87 | 2014 |
Biopolymer structure simulation and optimization via fragment regrowth Monte Carlo J Zhang, SC Kou, JS Liu The Journal of chemical physics 126 (22), 225101, 2007 | 85 | 2007 |
Consumer responses towards home energy financial incentives: A survey-based study T Zhao, L Bell, MW Horner, J Sulik, J Zhang Energy Policy, 2012 | 83 | 2012 |
On side-chain conformational entropy of proteins J Zhang, JS Liu PLoS Comput Biol 2 (12), e168, 2006 | 76 | 2006 |
Origin of scaling behavior of protein packing density: A sequential Monte Carlo study of compact long chain polymers J Zhang, R Chen, C Tang, J Liang The Journal of chemical physics 118 (13), 6102-6109, 2003 | 74 | 2003 |
Fast protein loop sampling and structure prediction using distance-guided sequential chain-growth Monte Carlo method K Tang, J Zhang, J Liang PLoS Comput Biol 10 (4), e1003539, 2014 | 68 | 2014 |
ProDCoNN: Protein design using a convolutional neural network Y Zhang, Y Chen, C Wang, CC Lo, X Liu, W Wu, J Zhang Proteins: Structure, Function, and Bioinformatics 88 (7), 819-829, 2020 | 67 | 2020 |
Multi-Granularity Self-Attention for Neural Machine Translation J Hao, X Wang, S Shi, J Zhang, Z Tu arXiv preprint arXiv:1909.02222, 2019 | 67 | 2019 |
A mathematical framework for protein structure comparison W Liu, A Srivastava, J Zhang PLoS Comput Biol 7 (2), e1001075, 2011 | 63 | 2011 |
Tumoral expression of drug and xenobiotic metabolizing enzymes in breast cancer patients of different ethnicities with implications to personalized medicine Y Li, A Steppi, Y Zhou, F Mao, PC Miller, MM He, T Zhao, Q Sun, J Zhang Scientific reports 7 (1), 4747, 2017 | 57 | 2017 |
Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine R Islamaj Doğan, S Kim, A Chatr-aryamontri, CH Wei, DC Comeau, ... Database 2019, 2019 | 52 | 2019 |
Extracting chemical–protein interactions from literature using sentence structure analysis and feature engineering PY Lung, Z He, T Zhao, D Yu, J Zhang Database 2019, 2019 | 49 | 2019 |
Coordinated upregulation of mitochondrial biogenesis and autophagy in breast cancer cells: The role of dynamin related protein-1 and implication for breast cancer treatment P Zou, L Liu, LD Zheng, KK Payne, MH Manjili, MO Idowu, J Zhang, ... Oxidative medicine and cellular longevity 2016, 2016 | 48 | 2016 |
The regulatory landscape of early maize inflorescence development RK Parvathaneni, E Bertolini, M Shamimuzzaman, DL Vera, PY Lung, ... Genome biology 21 (1), 1-33, 2020 | 46 | 2020 |