BiomedCLIP: a multimodal biomedical foundation model pretrained from fifteen million scientific image-text pairs S Zhang, Y Xu, N Usuyama, H Xu, J Bagga, R Tinn, S Preston, R Rao, ... arXiv preprint arXiv:2303.00915, 2023 | 22 | 2023 |
Learning dynamic graph embedding for traffic flow forecasting: A graph self-attentive method Z Kang, H Xu, J Hu, X Pei 2019 IEEE intelligent transportation systems conference (ITSC), 2570-2576, 2019 | 21 | 2019 |
Multilingual translation for zero-shot biomedical classification using BioTranslator H Xu, A Woicik, H Poon, RB Altman, S Wang Nature Communications 14 (1), 738, 2023 | 17 | 2023 |
Protranslator: zero-shot protein function prediction using textual description H Xu, S Wang International Conference on Research in Computational Molecular Biology, 279-294, 2022 | 16 | 2022 |
ARIC: accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data W Zhang, H Xu, R Qiao, B Zhong, X Zhang, J Gu, X Zhang, L Wei, X Wang Briefings in Bioinformatics 23 (1), bbab362, 2022 | 16 | 2022 |
S3: Side-channel attack on stylus pencil through sensors H Farrukh, T Yang, H Xu, Y Yin, H Wang, ZB Celik Proceedings of the ACM on Interactive, Mobile, Wearable and Ubiquitous …, 2021 | 16 | 2021 |
Deep flanking sequence engineering for efficient promoter design using DeepSEED P Zhang, H Wang, H Xu, L Wei, L Liu, Z Hu, X Wang Nature communications 14 (1), 6309, 2023 | 13 | 2023 |
A whole-slide foundation model for digital pathology from real-world data H Xu, N Usuyama, J Bagga, S Zhang, R Rao, T Naumann, C Wong, ... Nature, 1-8, 2024 | 6 | 2024 |
Poisoning scientific knowledge using large language models J Yang, H Xu, S Mirzoyan, T Chen, Z Liu, W Ju, L Liu, M Zhang, S Wang bioRxiv, 2023.11. 06.565928, 2023 | 6 | 2023 |
cfDNApipe: a comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data W Zhang, L Wei, J Huang, B Zhong, J Li, H Xu, S He, Y Liu, J Liu, H Lv, ... Bioinformatics 37 (22), 4251-4252, 2021 | 6 | 2021 |
Training small multimodal models to bridge biomedical competency gap: A case study in radiology imaging JMZ Chaves, SC Huang, Y Xu, H Xu, N Usuyama, S Zhang, F Wang, ... arXiv preprint arXiv:2403.08002, 2024 | 5 | 2024 |
When an image is worth 1,024 x 1,024 words: A case study in computational pathology W Wang, S Ma, H Xu, N Usuyama, J Ding, H Poon, F Wei arXiv preprint arXiv:2312.03558, 2023 | 4 | 2023 |
GraphPrompt: Graph-based prompt templates for biomedical synonym prediction H Xu, J Zhang, Z Wang, S Zhang, M Bhalerao, Y Liu, D Zhu, S Wang Proceedings of the AAAI Conference on Artificial Intelligence 37 (9), 10576 …, 2023 | 4 | 2023 |
T-rex: Text-assisted retrosynthesis prediction Y Liu, H Xu, T Fang, H Xi, Z Liu, S Zhang, H Poon, S Wang arXiv preprint arXiv:2401.14637, 2024 | 2 | 2024 |
Gemini: memory-efficient integration of hundreds of gene networks with high-order pooling A Woicik, M Zhang, H Xu, S Mostafavi, S Wang Bioinformatics 39 (Supplement_1), i504-i512, 2023 | 2 | 2023 |
Pisces: A cross-modal contrastive learning approach to synergistic drug combination prediction J Lin, H Xu, A Woicik, J Ma, S Wang bioRxiv, 2022.11. 21.517439, 2022 | 2 | 2022 |
GPro: generative AI-empowered toolkit for promoter design H Wang, Q Du, Y Wang, H Xu, Z Wei, X Wang Bioinformatics 40 (3), btae123, 2024 | 1 | 2024 |
Pisces: A multi-modal data augmentation approach for drug combination synergy prediction H Xu, J Lin, A Woicik, Z Liu, J Ma, S Zhang, H Poon, L Wang, S Wang | 1 | 2022 |
Enhancing Hi-C contact matrices for loop detection with Capricorn: a multiview diffusion model T Fang, Y Liu, A Woicik, M Lu, A Jha, X Wang, G Li, B Hristov, Z Liu, H Xu, ... Bioinformatics 40 (Supplement_1), i471-i480, 2024 | | 2024 |
Training Small Multimodal Models to Bridge Biomedical Competency Gap: A Case Study in Radiology Imaging JM Zambrano Chaves, SC Huang, Y Xu, H Xu, N Usuyama, S Zhang, ... arXiv e-prints, arXiv: 2403.08002, 2024 | | 2024 |