| Accurate detection of complex structural variations using single-molecule sequencing FJ Sedlazeck, P Rescheneder, M Smolka, H Fang, M Nattestad, ... Nature methods 15 (6), 461-468, 2018 | 1319 | 2018 |
| Thiol-linked alkylation of RNA to assess expression dynamics VA Herzog, B Reichholf, T Neumann, P Rescheneder, P Bhat, TR Burkard, ... Nature methods 14 (12), 1198-1204, 2017 | 495 | 2017 |
| NextGenMap: fast and accurate read mapping in highly polymorphic genomes FJ Sedlazeck, P Rescheneder, A Von Haeseler Bioinformatics 29 (21), 2790-2791, 2013 | 410 | 2013 |
| SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis M Muhar, A Ebert, T Neumann, C Umkehrer, J Jude, C Wieshofer, ... Science 360 (6390), 800-805, 2018 | 313 | 2018 |
| A-type lamins bind both hetero-and euchromatin, the latter being regulated by lamina-associated polypeptide 2 alpha K Gesson, P Rescheneder, MP Skoruppa, A von Haeseler, T Dechat, ... Genome research 26 (4), 462-473, 2016 | 197 | 2016 |
| Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line M Nattestad, S Goodwin, K Ng, T Baslan, FJ Sedlazeck, P Rescheneder, ... Genome research 28 (8), 1126-1135, 2018 | 174 | 2018 |
| Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets T Neumann, VA Herzog, M Muhar, A von Haeseler, J Zuber, SL Ameres, ... BMC bioinformatics 20, 1-16, 2019 | 105 | 2019 |
| The Borrelia burgdorferi RelA/SpoT Homolog and Stringent Response Regulate Survival in the Tick Vector and Global Gene Expression during Starvation D Drecktrah, M Lybecker, N Popitsch, P Rescheneder, LS Hall, ... PLoS Pathogens 11 (9), e1005160, 2015 | 94 | 2015 |
| Revisiting the coding potential of the E. coli genome through Hfq co-immunoprecipitation I Bilusic, N Popitsch, P Rescheneder, R Schroeder, M Lybecker RNA biology 11 (5), 641-654, 2014 | 85 | 2014 |
| Temperature-dependent sRNA transcriptome of the Lyme disease spirochete N Popitsch, I Bilusic, P Rescheneder, R Schroeder, M Lybecker BMC genomics 18, 1-14, 2017 | 50 | 2017 |
| Natural RNA polymerase aptamers regulate transcription in E. coli N Sedlyarova, P Rescheneder, A Magan, N Popitsch, N Rziha, I Bilusic, ... Molecular cell 67 (1), 30-43. e6, 2017 | 49 | 2017 |
| Teaser: Individualized benchmarking and optimization of read mapping results for NGS data M Smolka, P Rescheneder, MC Schatz, A von Haeseler, FJ Sedlazeck Genome biology 16, 1-10, 2015 | 32 | 2015 |
| The Stringent Response-Regulated sRNA Transcriptome of Borrelia burgdorferi D Drecktrah, LS Hall, P Rescheneder, M Lybecker, DS Samuels Frontiers in cellular and infection microbiology 8, 231, 2018 | 24 | 2018 |
| Thiol-linked alkylation for the metabolic sequencing of RNA VA Herzog, B Reichholf, T Neumann, P Rescheneder, P Bhat, TR Burkard, ... bioRxiv, 177642, 2017 | 5 | 2017 |
| MASon: Million Alignments in Seconds-A Platform Independent Pairwise Sequence Alignment Library for next Generation Sequencing Data P Rescheneder, A von Haeseler, FJ Sedlazeck International Conference on Bioinformatics Models, Methods and Algorithms 2 …, 2012 | 4 | 2012 |
| Haplotype-resolved analysis of cancer genomes and epigenomes using Oxford Nanopore sequencing P Rescheneder, P James, S McKenzie, A Talenti, S Aganezov, D Turner, ... Cancer Research 84 (6_Supplement), 6218-6218, 2024 | | 2024 |
| Abstract LB081: Concurrent characterization of somatic nucleotide mutations, 5mC, and 5hmC methylation in clinical research samples using a single nanopore sequencing assay S Aganezov, P Rescheneder, J Beaulaurier, P James, S Juul Cancer Research 83 (8_Supplement), LB081-LB081, 2023 | | 2023 |
| SV detection, SNP phasing and haplotype methylation calling from one nanopore sequencing dataset provides insights to complex genomic disorder HM Jeffery, P Rescheneder, D Turner, P James, S Juul EUROPEAN JOURNAL OF HUMAN GENETICS 30 (SUPPL 1), 554-554, 2022 | | 2022 |
| Directly detect and phase genomic 5mC methylation with high reproducibility and low bias using Nanopore sequencing R Esteban, IA Vasilescu, MH Stoiber, DJ Turner, D Stoddart, E Harrington, ... EUROPEAN JOURNAL OF HUMAN GENETICS 30 (SUPPL 1), 549-549, 2022 | | 2022 |
| Performance benchmarking for calling and phasing of single-nucleotide polymorphisms and structural variants using Nanopore sequencing R Esteban, A Doran, IA Vasilescu, DJ Turner, D Stoddart, S Juul, ... EUROPEAN JOURNAL OF HUMAN GENETICS 30 (SUPPL 1), 441-442, 2022 | | 2022 |
