| A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 356 | 2023 |
| The Cancer Genome Atlas Clinical Explorer: a web and mobile interface for identifying clinical–genomic driver associations HJ Lee, J Palm, SM Grimes, HP Ji Genome medicine 7 (1), 1-14, 2015 | 97 | 2015 |
| Pangenome graph construction from genome alignments with Minigraph-Cactus G Hickey, J Monlong, J Ebler, AM Novak, JM Eizenga, Y Gao, T Marschall, ... Nature biotechnology 42 (4), 663-673, 2024 | 64 | 2024 |
| Single-cell analysis can define distinct evolution of tumor sites in follicular lymphoma S Haebe, T Shree, A Sathe, G Day, DK Czerwinski, SM Grimes, HJ Lee, ... Blood, The Journal of the American Society of Hematology 137 (21), 2869-2880, 2021 | 63 | 2021 |
| CRISPR–Cas9-targeted fragmentation and selective sequencing enable massively parallel microsatellite analysis GW Shin, SM Grimes, HJ Lee, BT Lau, LC Xia, HP Ji Nature communications 8 (1), 14291, 2017 | 57 | 2017 |
| Systematic genomic identification of colorectal cancer genes delineating advanced from early clinical stage and metastasis HJ Lee, P Flaherty, HP Ji BMC medical genomics 6, 1-15, 2013 | 55 | 2013 |
| RNA transcription and splicing errors as a source of cancer frameshift neoantigens for vaccines L Shen, J Zhang, HJ Lee, MT Batista, SA Johnston Scientific reports 9 (1), 14184, 2019 | 50 | 2019 |
| Colorectal Cancer Metastases in the Liver Establish Immunosuppressive Spatial Networking between Tumor-Associated SPP1+ Macrophages and Fibroblasts A Sathe, K Mason, SM Grimes, Z Zhou, BT Lau, X Bai, A Su, X Tan, ... Clinical Cancer Research 29 (1), 244-260, 2023 | 45 | 2023 |
| Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies BT Lau, D Pavlichin, AC Hooker, A Almeda, G Shin, J Chen, MK Sahoo, ... Genome medicine 13, 1-23, 2021 | 28 | 2021 |
| A deep learning model for molecular label transfer that enables cancer cell identification from histopathology images A Su, HJ Lee, X Tan, CJ Suarez, N Andor, Q Nguyen, HP Ji NPJ precision oncology 6 (1), 14, 2022 | 25 | 2022 |
| SVEngine: an efficient and versatile simulator of genome structural variations with features of cancer clonal evolution LC Xia, D Ai, H Lee, N Andor, C Li, NR Zhang, HP Ji Gigascience 7 (7), giy081, 2018 | 20 | 2018 |
| CRISPRpic: fast and precise analysis for CRISPR-induced mutations via prefixed index counting HJ Lee, HY Chang, SW Cho, HP Ji NAR genomics and bioinformatics 2 (2), lqaa012, 2020 | 19 | 2020 |
| Targeted short read sequencing and assembly of re-arrangements and candidate gene loci provide megabase diplotypes GW Shin, SU Greer, LC Xia, HJ Lee, J Zhou, TC Boles, HP Ji Nucleic acids research 47 (19), e115-e115, 2019 | 17 | 2019 |
| Single-color digital PCR provides high-performance detection of cancer mutations from circulating DNA C Wood-Bouwens, BT Lau, CM Handy, HJ Lee, HP Ji The Journal of Molecular Diagnostics 19 (5), 697-710, 2017 | 17 | 2017 |
| Therapeutic monitoring of circulating DNA mutations in metastatic cancer with personalized digital PCR CM Wood-Bouwens, D Haslem, B Moulton, AF Almeda, H Lee, ... The Journal of Molecular Diagnostics 22 (2), 247-261, 2020 | 15 | 2020 |
| Profiling diverse sequence tandem repeats in colorectal cancer reveals co-occurrence of microsatellite and chromosomal instability involving Chromosome 8 GW Shin, SU Greer, E Hopmans, SM Grimes, HJ Lee, L Zhao, L Miotke, ... Genome medicine 13, 1-18, 2021 | 13 | 2021 |
| Single-molecule methylation profiles of cell-free DNA in cancer with nanopore sequencing BT Lau, A Almeda, M Schauer, M McNamara, X Bai, Q Meng, M Partha, ... Genome Medicine 15 (1), 33, 2023 | 11 | 2023 |
| Characterization of the consensus mucosal microbiome of colorectal cancer L Zhao, SM Grimes, SU Greer, M Kubit, HJ Lee, LD Nadauld, HP Ji NAR cancer 3 (4), zcab049, 2021 | 10 | 2021 |
| Unique k-mer sequences for validating cancer-related substitution, insertion and deletion mutations HJ Lee, A Shuaibi, JM Bell, DS Pavlichin, HP Ji NAR cancer 2 (4), zcaa034, 2020 | 10 | 2020 |
| Whole genome analysis identifies the association of TP53 genomic deletions with lower survival in Stage III colorectal cancer LC Xia, P Van Hummelen, M Kubit, HJ Lee, JM Bell, SM Grimes, ... Scientific reports 10 (1), 5009, 2020 | 10 | 2020 |
