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Ayush Raman
Ayush Raman
Broad Institute of MIT and Harvard | DFCI | MGH, HMS
在 broadinstitute.org 的电子邮件经过验证 - 首页
标题
引用次数
引用次数
年份
Genomic classification of cutaneous melanoma
R Akbani, KC Akdemir, B áArman Aksoy, M Albert, A Ally, SB Amin, ...
Cell 161 (7), 1681-1696, 2015
27182015
Accumulation of long-chain fatty acids in the tumor microenvironment drives dysfunction in intrapancreatic CD8+ T cells
T Manzo, BM Prentice, KG Anderson, A Raman, A Schalck, GS Codreanu, ...
Journal of Experimental Medicine 217 (8), 2020
1842020
A FOXO3–IRF7 gene regulatory circuit limits inflammatory sequelae of antiviral responses
V Litvak, AV Ratushny, AE Lampano, F Schmitz, AC Huang, A Raman, ...
Nature 490 (7420), 421-425, 2012
1692012
TRIM28 and Interacting KRAB-ZNFs Control Self-Renewal of Human Pluripotent Stem Cells through Epigenetic Repression of Pro-differentiation Genes
U Oleksiewicz*, M Gładych*, AT Raman*, H Heyn, E Mereu, ...
Stem cell reports 9 (6), 2065-2080, 2017
812017
Linoleic acid potentiates CD8+ T cell metabolic fitness and antitumor immunity
CBN Lauson, S Tiberti, PA Corsetto, F Conte, P Tyagi, M Machwirth, ...
Cell Metabolism 35 (4), 633-650. e9, 2023
572023
Forniceal deep brain stimulation induces gene expression and splicing changes that promote neurogenesis and plasticity
AE Pohodich, H Yalamanchili, AT Raman, YW Wan, M Gundry, S Hao, ...
Elife 7, e34031, 2018
512018
Enhancer reprogramming confers dependence on glycolysis and IGF signaling in KMT2D mutant melanoma
M Maitituoheti, EZ Keung, M Tang, L Yan, H Alam, G Han, AK Singh, ...
Cell reports 33 (3), 2020
502020
Atypical plant homeodomain of UBR7 functions as an H2BK120Ub ligase and breast tumor suppressor
S Adhikary*, D Chakravarti*, C Terranova*, I Sengupta, M Maitituoheti, ...
Nature Communications 10 (1), 1398, 2019
502019
Smart-RRBS for single-cell methylome and transcriptome analysis
H Gu*, AT Raman*, X Wang, F Gaiti, R Chaligne, AW Mohammad, ...
Nature Protocols, 1-36, 2021
432021
Apparent bias toward long gene misregulation in MeCP2 syndromes disappears after controlling for baseline variations
AT Raman*, AE Pohodich*, YW Wan, HK Yalamanchili, WE Lowry, ...
Nature communications 9 (1), 3225, 2018
392018
Extended-representation bisulfite sequencing of gene regulatory elements in multiplexed samples and single cells
SJ Shareef, SM Bevill, AT Raman, MJ Aryee, P van Galen, V Hovestadt, ...
Nature biotechnology 39 (9), 1086-1094, 2021
342021
Chromatin state dynamics confers specific therapeutic strategies in enhancer subtypes of colorectal cancer
E Orouji*, AT Raman*, AK Singh*, A Sorokin, E Arslan, AK Ghosh, ...
Gut 71 (5), 938-949, 2022
322022
An Integrated Platform for Genome-wide Mapping of Chromatin States Using High-Throughput ChIP-sequencing in Tumor Tissues
C Terranova, M Tang, E Orouji, M Maitituoheti, A Raman, S Amin, Z Liu, ...
J Vis Exp., 2018
322018
Reprogramming of H3K9bhb at regulatory elements is a key feature of fasting in the small intestine
CJ Terranova, KM Stemler, P Barrodia, SL Jeter-Jones, Z Ge, ...
Cell reports 37 (8), 2021
242021
Reprogramming of bivalent chromatin states in NRAS mutant melanoma suggests PRC2 inhibition as a therapeutic strategy
CJ Terranova*, M Tang*, M Maitituoheti*, AT Raman, AK Ghosh, J Schulz, ...
Cell Reports 36 (3), 109410, 2021
222021
Detecting hidden batch factors through data adaptive adjustment for biological effects
H Yi*, AT Raman*, H Zhang, GI Allen, Z Liu
Bioinformatics, 2017
202017
DNA hypomethylation silences anti-tumor immune genes in early prostate cancer and CTCs
H Guo, JA Vuille, BS Wittner, EM Lachtara, Y Hou, M Lin, T Zhao, ...
Cell 186 (13), 2765-2782. e28, 2023
192023
Enhancer reprogramming in PRC2-deficient malignant peripheral nerve sheath tumors induces a targetable de-differentiated state
V Kochat*, AT Raman*, SM Landers, M Tang, J Schulz, C Terranova, ...
Acta Neuropathologica, 1-26, 2021
182021
Nr2f1 heterozygous knockout mice recapitulate neurological phenotypes of Bosch-Boonstra-Schaaf optic atrophy syndrome and show impaired hippocampal …
CA Chen, W Wang, SE Pedersen, A Raman, ML Seymour, FR Ruiz, A Xia, ...
Human Molecular Genetics 29 (5), 705-715, 2020
172020
A research parasite's perspective on establishing a baseline to avoid errors in secondary analyses
AT Raman
GigaScience 10 (3), giab015, 2021
52021
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