Identification of coding and non-coding sequences using local Hölder exponent formalism OC Kulkarni, R Vigneshwar, VK Jayaraman, BD Kulkarni Bioinformatics 21 (20), 3818-3823, 2005 | 29 | 2005 |
Genome inventory and analysis of nuclear hormone receptors in Tetraodon nigroviridis RPR Metpally, R Vigneshwar, R Sowdhamini Journal of biosciences 32, 43-50, 2007 | 21 | 2007 |
Effects of polydisperse crowders on aggregation reactions: A molecular thermodynamic analysis D Shah, AL Tan, V Ramakrishnan, J Jiang, R Rajagopalan The Journal of chemical physics 134 (6), 2011 | 16 | 2011 |
Macromolecular crowding in vitro as means of emulating cellular interiors: When less might be more KS Harve, R Vigneshwar, R Rajagopalan, M Raghunath Proceedings of the National Academy of Sciences 105 (51), E119-E119, 2008 | 16 | 2008 |
Identification of glucose-binding pockets in human serum albumin using support vector machine and molecular dynamics simulations P Ranganarayanan, N Thanigesan, V Ananth, VK Jayaraman, ... IEEE/ACM Transactions on Computational Biology and Bioinformatics 13 (1 …, 2015 | 12 | 2015 |
Investigations on a polyherbal formulation for treatment of cognitive impairment in a cholinergic dysfunctional rodent model K Rajendran, DR Chellappan, S Sankaranarayanan, V Ramakrishnan, ... Neurochemistry International 141, 104890, 2020 | 10 | 2020 |
Interaction of Tenebrio Molitor Antifreeze Protein with Ice Crystal: Insights from Molecular Dynamics Simulations L Ramya, V Ramakrishnan Molecular Informatics 35 (6-7), 268-277, 2016 | 9 | 2016 |
Transcriptional regulation of the pregnane-X receptor by the Ayurvedic formulation Chandraprabha Vati S Selvaraj, R Ramanathan, V Vasudevaraja, KS Rajan, S Krishnaswamy, ... RSC advances 4 (110), 64967-64976, 2014 | 8 | 2014 |
Dynamics and thermodynamics of water around EcoRI bound to a minimally mutated DNA chain V Ramakrishnan, R Rajagopalan Physical Chemistry Chemical Physics 14 (35), 12277-12284, 2012 | 7 | 2012 |
Dynamic and structural changes in the minimally restructuring ecori bound to a minimally mutated dna chain V Ramakrishnan, S Jagannathan, AR Shaikh, R Rajagopalan Journal of Biomolecular Structure and Dynamics 29 (4), 743-756, 2012 | 6 | 2012 |
Identification of phase separating proteins with distributed reduced alphabet representations of sequences A Lahorkar, H Bhosale, A Sane, V Ramakrishnan, VK Jayaraman IEEE/ACM Transactions on Computational Biology and Bioinformatics 20 (1 …, 2022 | 5 | 2022 |
Support vector machine-based prediction of pore-forming toxins (PFT) using distributed representation of reduced alphabets H Bhosale, V Ramakrishnan, VK Jayaraman Journal of Bioinformatics and Computational Biology 19 (05), 2150028, 2021 | 5 | 2021 |
Investigating the effect of charged amino acids on DNA conformation in EcoRI–DNA complex: a molecular dynamics simulation study S Ramachandrakurup, S Ammapalli, V Ramakrishnan Journal of Biomolecular Structure and Dynamics 35 (16), 3540-3554, 2017 | 4 | 2017 |
Effect of glycerol on free DNA: A molecular dynamics simulation study A Diaz, HB Jothiraman, V Ramakrishnan Journal of Molecular Graphics and Modelling 114, 108169, 2022 | 3 | 2022 |
Towards understanding the mechanism of action of a polyherbal formulation using a multi-pronged strategy HA Preethy, K Rajendran, A Mishra, A Karthikeyan, DR Chellappan, ... Computers in Biology and Medicine 141, 104999, 2022 | 2 | 2022 |
Effect of osmolytes on the EcoRI endonuclease: Insights into hydration and protein dynamics from molecular dynamics simulations A Diaz, V Ramakrishnan Computational Biology and Chemistry 105, 107883, 2023 | 1 | 2023 |
Distributed reduced alphabet representation for predicting proinflammatory peptides H Bhosale, A Sane, V Ramakrishnan, VK Jayaraman International Conference on Data Management, Analytics & Innovation, 161-173, 2023 | 1 | 2023 |
Effect of NaeI-L43K mutation on protein dynamics and DNA conformation: Insights from molecular dynamics simulations S Ramachandrakurup, V Ramakrishnan Journal of Molecular Graphics and Modelling 76, 456-465, 2017 | 1 | 2017 |
Protein feature engineering framework for AMPylation site prediction H Prabhu, H Bhosale, A Sane, R Dhadwal, V Ramakrishnan, J Valadi Scientific Reports 14 (1), 8695, 2024 | | 2024 |
Therapeutic efficacy of Punarnavadi mandura against phenylhydrazine-induced hemolytic anemia in rats K Rajendran, DR Chellappan, V Ramakrishnan, UM Krishnan Journal of Traditional and Complementary Medicine, 2024 | | 2024 |