Network-based methods for predicting essential genes or proteins: a survey X Li, W Li, M Zeng, R Zheng, M Li Briefings in bioinformatics 21 (2), 566-583, 2020 | 121 | 2020 |
NIDM: network impulsive dynamics on multiplex biological network for disease-gene prediction J Xiang, J Zhang, R Zheng, X Li, M Li Briefings in Bioinformatics 22 (5), bbab080, 2021 | 24 | 2021 |
Sequence-derived markers of drug targets and potentially druggable human proteins S Ghadermarzi, X Li, M Li, L Kurgan Frontiers in Genetics 10, 1075, 2019 | 21 | 2019 |
FUNMarker: Fusion network-based method to identify prognostic and heterogeneous breast cancer biomarkers X Li, J Xiang, J Wang, J Li, FX Wu, M Li IEEE/ACM transactions on computational biology and bioinformatics 18 (6 …, 2020 | 11 | 2020 |
Evaluation of pathway activation for a single sample toward inflammatory bowel disease classification X Li, M Li, R Zheng, X Chen, J Xiang, FX Wu, J Wang Frontiers in Genetics 10, 1401, 2020 | 10 | 2020 |
NetAUC: A network-based multi-biomarker identification method by AUC optimization XY Li, J Xiang, FX Wu, M Li Methods 198, 56-64, 2022 | 6 | 2022 |
SEPA: signaling entropy-based algorithm to evaluate personalized pathway activation for survival analysis on pan-cancer data X Li, M Li, J Xiang, Z Zhao, X Shang Bioinformatics 38 (9), 2536-2543, 2022 | 5 | 2022 |
A dual ranking algorithm based on the multiplex network for heterogeneous complex disease analysis X Li, J Xiang, FX Wu, M Li IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (4 …, 2021 | 5 | 2021 |
A sequence-based machine learning model for predicting antigenic distance for H3N2 influenza virus X Li, Y Li, X Shang, H Kong Frontiers in Microbiology 15, 1345794, 2024 | 3 | 2024 |
Identification of prognostic and heterogeneous breast cancer biomarkers based on fusion network and multiple scoring strategies X Li, J Xiang, J Wang, FX Wu, M Li Intelligent Computing Theories and Application: 15th International …, 2019 | 2 | 2019 |
Scbean: a python library for single-cell multi-omics data analysis H Zhang, Y Wang, B Lian, Y Wang, X Li, T Wang, X Shang, H Yang, ... Bioinformatics 40 (2), btae053, 2024 | 1 | 2024 |
A multi-source fusion method to identify biomarkers for breast cancer prognosis based on dual-layer heterogeneous network X Li, Z Zhao, J Xiang, J Hu, X Shang 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2022 | 1 | 2022 |
A topological AUC-based biomarker ensemble method for the complex disease analysis X Li, J Xiang, FX Wu, M Li 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2020 | 1 | 2020 |
Classification of schizophrenia by iterative random forest feature selection based on DNA methylation array data X Hu, M Li, L Wang, X Li, FX Wu, J Wang 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2019 | 1 | 2019 |
DualRank: Multiplex network-based dual ranking for heterogeneous complex disease analysis X Li, J Xiang, X Hu, FX Wu, M Li 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2019 | 1 | 2019 |
Pathway Activation Analysis for Pan-Cancer Personalized Characterization Based on Riemannian Manifold X Li, J Hao, J Li, Z Zhao, X Shang, M Li International Journal of Molecular Sciences 25 (8), 4411, 2024 | | 2024 |
A personalized pathway activation inference method based on pathway structure for classification of inflammatory bowel disease X Li, X Shang, Z Zhao, C Yan 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2023 | | 2023 |