Sequence clustering in bioinformatics: an empirical study Q Zou, G Lin, X Jiang, X Liu, X Zeng Briefings in bioinformatics 21 (1), 1-10, 2020 | 235 | 2020 |
Exploring links between pH and bacterial community composition in soils from the Craibstone Experimental Farm A Bartram, X Jiang, M Lynch, A Masella, G Nicol, J Dushoff, J Neufeld FEMS Microbiology Ecology 87 (2), 403-415, 2013 | 188 | 2013 |
Meta-analysis of the association between the monoamine oxidase-A gene and mood disorders M Fan, B Liu, T Jiang, X Jiang, H Zhao, J Zhang Psychiatric genetics 20 (1), 1-7, 2010 | 120 | 2010 |
Modularity in the genetic disease-phenotype network X Jiang, B Liu, J Jiang, H Zhao, M Fan, J Zhang, Z Fan, T Jiang FEBS letters 582 (17), 2549-2554, 2008 | 58 | 2008 |
Discovering communities in complex networks by edge label propagation W Liu, X Jiang, M Pellegrini, X Wang Scientific reports 6 (1), 22470, 2016 | 56 | 2016 |
Functional Biogeography of Ocean Microbes Revealed through Non-Negative Matrix Factorization X Jiang, MGI Langille, RY Neches, M Elliot, SA Levin, JA Eisen, JS Weitz, ... PLoS ONE 7 (9), e43866, 2012 | 53 | 2012 |
A non-negative matrix factorization framework for identifying modular patterns in metagenomic profile data X Jiang, JS Weitz, J Dushoff Journal of Mathematical Biology 64 (4), 697-711, 2012 | 34 | 2012 |
Neighbor affinity based algorithm for discovering temporal protein complex from dynamic PPI network X Shen, L Yi, X Jiang, Y Zhao, X Hu, T He, J Yang Methods 110, 90-96, 2016 | 33 | 2016 |
Predicting virus-host association by Kernelized logistic matrix factorization and similarity network fusion D Liu, Y Ma, X Jiang, T He BMC bioinformatics 20, 1-10, 2019 | 31 | 2019 |
Visualization of genetic disease-phenotype similarities by multiple maps t-SNE with Laplacian regularization W Xu, X Jiang, X Hu, G Li BMC medical genomics 7, 1-9, 2014 | 30 | 2014 |
Exploring candidate genes for human brain diseases from a brain-specific gene network B Liu, T Jiang, S Ma, H Zhao, J Li, X Jiang, J Zhang Biochemical and biophysical research communications 349 (4), 1308-1314, 2006 | 29 | 2006 |
Hessian regularization based symmetric nonnegative matrix factorization for clustering gene expression and microbiome data Y Ma, X Hu, T He, X Jiang Methods 111, 80-84, 2016 | 26 | 2016 |
Graph embedding deep learning guides microbial biomarkers' identification Q Zhu, X Jiang, Q Zhu, M Pan, T He Frontiers in genetics 10, 1182, 2019 | 25 | 2019 |
Microbiome Data Representation by Joint Nonnegative Matrix Factorization with Laplacian Regularization X Jiang, X Hu, W Xu IEEE/ACM Transactions on Computational Biology and Bioinformatics 14 (2 …, 2017 | 22 | 2017 |
Multi-view clustering of microbiome samples by robust similarity network fusion and spectral clustering Y Zhang, X Hu, X Jiang IEEE/ACM transactions on computational biology and bioinformatics 14 (2 …, 2015 | 22 | 2015 |
A systems biology-based gene expression classifier of glioblastoma predicts survival with solid tumors J Zhang, B Liu, X Jiang, H Zhao, M Fan, Z Fan, JJ Lee, T Jiang, T Jiang, ... PLoS One 4 (7), e6274, 2009 | 22 | 2009 |
Predicting disease-microbe association by random walking on the heterogeneous network X Shen, Y Chen, X Jiang, X Hu, T He, J Yang 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2016 | 20 | 2016 |
Mining temporal protein complex based on the dynamic pin weighted with connected affinity and gene co-expression X Shen, L Yi, X Jiang, T He, X Hu, J Yang PloS one 11 (4), e0153967, 2016 | 20 | 2016 |
MiRNA-disease interaction prediction based on kernel neighborhood similarity and multi-network bidirectional propagation Y Ma, T He, L Ge, C Zhang, X Jiang BMC Medical Genomics 12, 1-14, 2019 | 19 | 2019 |
A novel framework for deep knowledge tracing via gating-controlled forgetting and learning mechanisms W Zhao, J Xia, X Jiang, T He Information Processing & Management 60 (1), 103114, 2023 | 18 | 2023 |