The MicroArray Quality Control (MAQC) project shows inter-and intraplatform reproducibility of gene expression measurements. L Shi, LH Reid, WD Jones, R Shippy, JA Warrington, SC Baker, PJ Collins, ... Nature biotechnology 24 (9), 1151-1161, 2006 | 2415 | 2006 |
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models Nature biotechnology 28 (8), 827-838, 2010 | 856 | 2010 |
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium Nature Biotechnology 32 (9), 903–914, 2014 | 846* | 2014 |
The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance C Wang, B Gong, PR Bushel, J Thierry-Mieg, D Thierry-Mieg, J Xu, ... Nature biotechnology 32 (9), 926-932, 2014 | 530 | 2014 |
Study of 202 natural, synthetic, and environmental chemicals for binding to the androgen receptor H Fang, W Tong, WS Branham, CL Moland, SL Dial, H Hong, Q Xie, ... Chemical research in toxicology 16 (10), 1338-1358, 2003 | 451 | 2003 |
Coumarin-based inhibitors of HIV integrase H Zhao, N Neamati, H Hong, A Mazumder, S Wang, S Sunder, GWA Milne, ... Journal of medicinal chemistry 40 (2), 242-249, 1997 | 410 | 1997 |
Comparison of RNA-seq and microarray-based models for clinical endpoint prediction W Zhang, Y Yu, F Hertwig, J Thierry-Mieg, W Zhang, D Thierry-Mieg, ... Genome biology 16, 1-12, 2015 | 402 | 2015 |
A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages Y Yu, JC Fuscoe, C Zhao, C Guo, M Jia, T Qing, DI Bannon, L Lancashire, ... Nature communications 5 (1), 1-11, 2014 | 364 | 2014 |
A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data J Luo, M Schumacher, A Scherer, D Sanoudou, D Megherbi, T Davison, ... The pharmacogenomics journal 10 (4), 278-291, 2010 | 357 | 2010 |
Depsides and depsidones as inhibitors of HIV-1 integrase: discovery of novel inhibitors through 3D database searching N Neamati, H Hong, A Mazumder, S Wang, S Sunder, MC Nicklaus, ... Journal of medicinal chemistry 40 (6), 942-951, 1997 | 324 | 1997 |
CERAPP: collaborative estrogen receptor activity prediction project K Mansouri, A Abdelaziz, A Rybacka, A Roncaglioni, A Tropsha, A Varnek, ... Environmental health perspectives 124 (7), 1023-1033, 2016 | 316 | 2016 |
Persistent organic pollutants in food: contamination sources, health effects and detection methods W Guo, B Pan, S Sakkiah, G Yavas, W Ge, W Zou, W Tong, H Hong International journal of environmental research and public health 16 (22), 4361, 2019 | 310 | 2019 |
Mold2, Molecular Descriptors from 2D Structures for Chemoinformatics and Toxicoinformatics H Hong, Q Xie, W Ge, F Qian, H Fang, L Shi, Z Su, R Perkins, W Tong Journal of chemical information and modeling 48 (7), 1337-1344, 2008 | 295 | 2008 |
Decision forest: combining the predictions of multiple independent decision tree models W Tong, H Hong, H Fang, Q Xie, R Perkins Journal of Chemical Information and Computer Sciences 43 (2), 525-531, 2003 | 273 | 2003 |
The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies L Shi, WD Jones, RV Jensen, SC Harris, RG Perkins, FM Goodsaid, ... BMC bioinformatics 9, 1-19, 2008 | 264 | 2008 |
ArrayTrack--supporting toxicogenomic research at the US Food and Drug Administration National Center for Toxicological Research. W Tong, X Cao, S Harris, H Sun, H Fang, J Fuscoe, A Harris, H Hong, ... Environmental health perspectives 111 (15), 1819-1826, 2003 | 249 | 2003 |
Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential L Shi, W Tong, H Fang, U Scherf, J Han, RK Puri, FW Frueh, FM Goodsaid, ... BMC bioinformatics 6, 1-14, 2005 | 247 | 2005 |
Next-generation sequencing and its applications in molecular diagnostics Z Su, B Ning, H Fang, H Hong, R Perkins, W Tong, L Shi Expert review of molecular diagnostics 11 (3), 333-343, 2011 | 232 | 2011 |
HIV-1 integrase pharmacophore: discovery of inhibitors through three-dimensional database searching MC Nicklaus, N Neamati, H Hong, A Mazumder, S Sunder, J Chen, ... Journal of medicinal chemistry 40 (6), 920-929, 1997 | 217 | 1997 |
An investigation of biomarkers derived from legacy microarray data for their utility in the RNA-seq era Z Su, H Fang, H Hong, L Shi, W Zhang, W Zhang, Y Zhang, Z Dong, ... Genome biology 15, 1-25, 2014 | 178 | 2014 |