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Junjie Chen
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Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences
B Liu, F Liu, X Wang, J Chen, L Fang, KC Chou
Nucleic acids research 43 (W1), W65-W71, 2015
7512015
Haplotype-resolved diverse human genomes and integrated analysis of structural variation
P Ebert, PA Audano, Q Zhu, B Rodriguez-Martin, D Porubsky, MJ Bonder, ...
Science 372 (6537), eabf7117, 2021
4692021
Identification of real microRNA precursors with a pseudo structure status composition approach
B Liu, L Fang, F Liu, X Wang, J Chen, KC Chou
PloS one 10 (3), e0121501, 2015
2662015
A comprehensive review and comparison of different computational methods for protein remote homology detection
J Chen, M Guo, X Wang, B Liu
Briefings in bioinformatics 19 (2), 231-244, 2018
1482018
dRHP-PseRA: detecting remote homology proteins using profile-based pseudo protein sequence and rank aggregation
J Chen, R Long, X Wang, B Liu, KC Chou
Scientific reports 6 (1), 32333, 2016
1032016
Application of learning to rank to protein remote homology detection
B Liu, J Chen, X Wang
Bioinformatics 31 (21), 3492-3498, 2015
972015
Protein remote homology detection by combining Chou’s distance-pair pseudo amino acid composition and principal component analysis
B Liu, J Chen, X Wang
Molecular Genetics and Genomics 290, 1919-1931, 2015
812015
miRNA-dis: microRNA precursor identification based on distance structure status pairs
B Liu, L Fang, J Chen, F Liu, X Wang
Molecular BioSystems 11 (4), 1194-1204, 2015
792015
Protein remote homology detection based on bidirectional long short-term memory
S Li, J Chen, B Liu
BMC bioinformatics 18, 1-8, 2017
722017
IMiRNA-SSF: improving the identification of MicroRNA precursors by combining negative sets with different distributions
J Chen, X Wang, B Liu
Scientific reports 6 (1), 19062, 2016
652016
Differential privacy protection against membership inference attack on machine learning for genomic data
J Chen, WH Wang, X Shi
BIOCOMPUTING 2021: Proceedings of the Pacific Symposium, 26-37, 2020
562020
ProtDec-LTR2. 0: an improved method for protein remote homology detection by combining pseudo protein and supervised Learning to Rank
J Chen, M Guo, S Li, B Liu
Bioinformatics 33 (21), 3473-3476, 2017
412017
Sparse convolutional denoising autoencoders for genotype imputation
J Chen, X Shi
Genes 10 (9), 652, 2019
382019
PAR-GAN: improving the generalization of generative adversarial networks against membership inference attacks
J Chen, WH Wang, H Gao, X Shi
Proceedings of the 27th ACM SIGKDD Conference on Knowledge Discovery & Data …, 2021
312021
Protein remote homology detection and fold recognition based on Sequence-Order Frequency Matrix
B Liu, J Chen, M Guo, X Wang
IEEE/ACM Transactions on Computational Biology and Bioinformatics 16 (1 …, 2017
242017
Association of CNVs with methylation variation
X Shi, S Radhakrishnan, J Wen, JY Chen, J Chen, BA Lam, RE Mills, ...
NPJ genomic medicine 5 (1), 41, 2020
222020
Protein remote homology detection based on an ensemble learning approach
J Chen, B Liu, D Huang
BioMed research international 2016 (1), 5813645, 2016
202016
Population-scale genomic data augmentation based on conditional generative adversarial networks
J Chen, ME Mowlaei, X Shi
Proceedings of the 11th ACM International Conference on Bioinformatics …, 2020
122020
CFAGO: cross-fusion of network and attributes based on attention mechanism for protein function prediction
Z Wu, M Guo, X Jin, J Chen, B Liu
Bioinformatics 39 (3), btad123, 2023
102023
A BERT-based generation model to transform medical texts to SQL queries for electronic medical records: model development and validation
Y Pan, C Wang, B Hu, Y Xiang, X Wang, Q Chen, J Chen, J Du
JMIR Medical Informatics 9 (12), e32698, 2021
102021
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