| Microbial signatures in the lower airways of mechanically ventilated COVID-19 patients associated with poor clinical outcome I Sulaiman, M Chung, L Angel, JCJ Tsay, BG Wu, ST Yeung, ... Nature microbiology 6 (10), 1245-1258, 2021 | 125 | 2021 |
| Yearlong COVID-19 infection reveals within-host evolution of SARS-CoV-2 in a patient with B-cell depletion V Nussenblatt, AE Roder, S Das, E de Wit, JH Youn, S Banakis, ... The Journal of infectious diseases 225 (7), 1118-1123, 2022 | 76 | 2022 |
| Best practices on the differential expression analysis of multi-species RNA-seq M Chung, VM Bruno, DA Rasko, CA Cuomo, JF Muñoz, J Livny, AC Shetty, ... Genome biology 22 (1), 121, 2021 | 68 | 2021 |
| Sulfurovum riftiae sp. nov., a mesophilic, thiosulfate-oxidizing, nitrate-reducing chemolithoautotrophic epsilonproteobacterium isolated from the tube of the deep-sea … D Giovannelli, M Chung, J Staley, V Starovoytov, N Le Bris, C Vetriani International journal of systematic and evolutionary microbiology 66 (7 …, 2016 | 67 | 2016 |
| Using core genome alignments to assign bacterial species M Chung, JB Munro, H Tettelin, JC Dunning Hotopp MSystems 3 (6), 10.1128/msystems. 00236-18, 2018 | 46 | 2018 |
| Sex chromosome evolution in parasitic nematodes of humans JM Foster, A Grote, J Mattick, A Tracey, YC Tsai, M Chung, JA Cotton, ... Nature communications 11 (1), 1964, 2020 | 43 | 2020 |
| Remdesivir use and risks of acute kidney injury and acute liver injury among patients hospitalised with COVID‐19: a self‐controlled case series study CKH Wong, ICH Au, WY Cheng, KKC Man, KTK Lau, LY Mak, SL Lui, ... Alimentary Pharmacology & Therapeutics 56 (1), 121-130, 2022 | 26 | 2022 |
| Targeted enrichment outperforms other enrichment techniques and enables more multi-species RNA-Seq analyses M Chung, L Teigen, H Liu, S Libro, A Shetty, N Kumar, X Zhao, ... Scientific reports 8 (1), 13377, 2018 | 22 | 2018 |
| Comparative transcriptomics of Aspergillus fumigatus strains upon exposure to human airway epithelial cells TN Watkins, H Liu, M Chung, TH Hazen, JC Dunning Hotopp, SG Filler, ... Microbial genomics 4 (2), e000154, 2018 | 21 | 2018 |
| Comparative Analysis of Genome of Ehrlichia sp. HF, a Model Bacterium to Study Fatal Human Ehrlichiosis M Lin, Q Xiong, M Chung, SC Daugherty, S Nagaraj, N Sengamalay, S Ott, ... BMC genomics 22, 1-22, 2021 | 20 | 2021 |
| Nearly complete genome sequence of Brugia malayi strain FR3 A Tracey, JM Foster, M Paulini, A Grote, J Mattick, YC Tsai, M Chung, ... Microbiology Resource Announcements 9 (24), 10.1128/mra. 00154-20, 2020 | 15 | 2020 |
| Draft genome sequence of the Wolbachia endosymbiont of Wuchereria bancrofti wWb M Chung, ST Small, D Serre, PA Zimmerman, JC Dunning Hotopp Pathogens and Disease 75 (9), ftx115, 2017 | 14 | 2017 |
| Multispecies Transcriptomics Data Set of Brugia malayi, Its Wolbachia Endosymbiont wBm, and Aedes aegypti across the B. malayi Life Cycle M Chung, L Teigen, S Libro, RE Bromley, N Kumar, L Sadzewicz, ... Microbiology Resource Announcements 7 (18), 10.1128/mra. 01306-18, 2018 | 12 | 2018 |
| Isolation of a divergent strain of Rickettsia japonica from Dew's Australian bat Argasid ticks (Argas (Carios) dewae) in Victoria, Australia L Izzard, M Chung, JD Hotopp, G Vincent, D Paris, S Graves, J Stenos Ticks and tick-borne diseases 9 (6), 1484-1488, 2018 | 11 | 2018 |
| FADU: a quantification tool for prokaryotic transcriptomic analyses M Chung, RS Adkins, JSA Mattick, KR Bradwell, AC Shetty, L Sadzewicz, ... Msystems 6 (1), 10.1128/msystems. 00917-20, 2021 | 10 | 2021 |
| Drug repurposing of bromodomain inhibitors as potential novel therapeutic leads for lymphatic filariasis guided by multispecies transcriptomics M Chung, LE Teigen, S Libro, RE Bromley, D Olley, N Kumar, ... Msystems 4 (6), 10.1128/msystems. 00596-19, 2019 | 9 | 2019 |
| Lower Airway Dysbiosis Augments Lung Inflammatory Injury in Mild-to-Moderate Chronic Obstructive Pulmonary Disease I Sulaiman, BG Wu, M Chung, B Isaacs, JCJ Tsay, M Holub, CR Barnett, ... American Journal of Respiratory and Critical Care Medicine 208 (10), 1101-1114, 2023 | 8 | 2023 |
| Accumulation of endosymbiont genomes in an insect autosome followed by endosymbiont replacement ES Tvedte, M Gasser, X Zhao, LJ Tallon, L Sadzewicz, RE Bromley, ... Current Biology 32 (12), 2786-2795. e5, 2022 | 7 | 2022 |
| Vaccination history, body mass index, age, and baseline gene expression predict influenza vaccination outcomes CV Forst, M Chung, M Hockman, L Lashua, E Adney, A Hickey, M Carlock, ... Viruses 14 (11), 2446, 2022 | 6 | 2022 |
| Dual RNAseq analyses at soma and germline levels reveal evolutionary innovations in the elephantiasis-agent Brugia malayi, and adaptation of its Wolbachia endosymbionts G Chevignon, V Foray, MM Pérez-Jiménez, S Libro, M Chung, JM Foster, ... PLoS neglected tropical diseases 15 (1), e0008935, 2021 | 6 | 2021 |
