An evolutionarily conserved mechanism for controlling the efficiency of protein translation T Tuller, A Carmi, K Vestsigian, S Navon, Y Dorfan, J Zaborske, T Pan, ... Cell 141 (2), 344-354, 2010 | 963 | 2010 |
Translation efficiency is determined by both codon bias and folding energy T Tuller, YY Waldman, M Kupiec, E Ruppin Proceedings of the national academy of sciences 107 (8), 3645-3650, 2010 | 661 | 2010 |
The effect of tRNA levels on decoding times of mRNA codons A Dana, T Tuller Nucleic acids research 42 (14), 9171-9181, 2014 | 263 | 2014 |
The average common substring approach to phylogenomic reconstruction I Ulitsky, D Burstein, T Tuller, B Chor Journal of Computational Biology 13 (2), 336-350, 2006 | 231 | 2006 |
Composite effects of gene determinants on the translation speed and density of ribosomes T Tuller, I Veksler-Lublinsky, N Gazit, M Kupiec, E Ruppin, M Ziv-Ukelson Genome biology 12, 1-18, 2011 | 221 | 2011 |
Genome-scale analysis of translation elongation with a ribosome flow model S Reuveni, I Meilijson, M Kupiec, E Ruppin, T Tuller PLoS computational biology 7 (9), e1002127, 2011 | 207 | 2011 |
Multiple roles of the coding sequence 5′ end in gene expression regulation T Tuller, H Zur Nucleic acids research 43 (1), 13-28, 2015 | 198 | 2015 |
Determinants of protein abundance and translation efficiency in S. cerevisiae T Tuller, M Kupiec, E Ruppin PLoS computational biology 3 (12), e248, 2007 | 164 | 2007 |
Maximum likelihood of evolutionary trees: hardness and approximation B Chor, T Tuller Bioinformatics 21 (suppl_1), i97-i106, 2005 | 155 | 2005 |
Determinants of translation elongation speed and ribosomal profiling biases in mouse embryonic stem cells A Dana, T Tuller PLoS computational biology 8 (11), e1002755, 2012 | 144 | 2012 |
Maximum likelihood of phylogenetic networks G Jin, L Nakhleh, S Snir, T Tuller Bioinformatics 22 (21), 2604-2611, 2006 | 143 | 2006 |
Modelling the efficiency of codon–tRNA interactions based on codon usage bias R Sabi, T Tuller DNA research 21 (5), 511-526, 2014 | 123 | 2014 |
A model for competition for ribosomes in the cell A Raveh, M Margaliot, ED Sontag, T Tuller Journal of The Royal Society Interface 13 (116), 20151062, 2016 | 122 | 2016 |
Common and specific signatures of gene expression and protein–protein interactions in autoimmune diseases T Tuller, S Atar, E Ruppin, M Gurevich, A Achiron Genes & Immunity 14 (2), 67-82, 2013 | 118 | 2013 |
Strong association between mRNA folding strength and protein abundance in S. cerevisiae H Zur, T Tuller EMBO reports 13 (3), 272-277, 2012 | 111 | 2012 |
Association between translation efficiency and horizontal gene transfer within microbial communities T Tuller, Y Girshovich, Y Sella, A Kreimer, S Freilich, M Kupiec, U Gophna, ... Nucleic acids research 39 (11), 4743-4755, 2011 | 109 | 2011 |
New universal rules of eukaryotic translation initiation fidelity H Zur, T Tuller PLoS computational biology 9 (7), e1003136, 2013 | 107 | 2013 |
Inferring phylogenetic networks by the maximum parsimony criterion: a case study G Jin, L Nakhleh, S Snir, T Tuller Molecular Biology and Evolution 24 (1), 324-337, 2007 | 100 | 2007 |
Maximum likelihood of evolutionary trees is hard B Chor, T Tuller Annual International Conference on Research in Computational Molecular …, 2005 | 98 | 2005 |
Translation efficiency in humans: tissue specificity, global optimization and differences between developmental stages YY Waldman, T Tuller, T Shlomi, R Sharan, E Ruppin Nucleic acids research 38 (9), 2964-2974, 2010 | 90 | 2010 |