| Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder A Krishnan, R Zhang, V Yao, CL Theesfeld, AK Wong, A Tadych, ... Nature neuroscience 19 (11), 1454-1462, 2016 | 440 | 2016 |
| Transcriptome analysis of adult Caenorhabditis elegans cells reveals tissue-specific gene and isoform expression R Kaletsky, V Yao, A Williams, AM Runnels, A Tadych, S Zhou, ... PLoS genetics 14 (8), e1007559, 2018 | 184 | 2018 |
| Targeted exploration and analysis of large cross-platform human transcriptomic compendia Q Zhu, AK Wong, A Krishnan, MR Aure, A Tadych, R Zhang, DC Corney, ... Nature methods 12 (3), 211-214, 2015 | 148 | 2015 |
| Selective neuronal vulnerability in Alzheimer’s disease: a network-based analysis JP Roussarie, V Yao, P Rodriguez-Rodriguez, R Oughtred, J Rust, ... Neuron 107 (5), 821-835. e12, 2020 | 137 | 2020 |
| IMP 2.0: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks AK Wong, A Krishnan, V Yao, A Tadych, OG Troyanskaya Nucleic acids research 43 (W1), W128-W133, 2015 | 72 | 2015 |
| Discriminatory power of combinatorial antigen recognition in cancer T cell therapies R Dannenfelser, GM Allen, B VanderSluis, AK Koegel, S Levinson, ... Cell systems 11 (3), 215-228. e5, 2020 | 69 | 2020 |
| Interactive big data resource to elucidate human immune pathways and diseases D Gorenshteyn, E Zaslavsky, M Fribourg, CY Park, AK Wong, A Tadych, ... Immunity 43 (3), 605-614, 2015 | 66 | 2015 |
| Spatial transcriptional mapping of the human nephrogenic program NO Lindström, R Sealfon, X Chen, RK Parvez, A Ransick, GDS Brandine, ... Developmental cell 56 (16), 2381-2398. e6, 2021 | 57 | 2021 |
| Modeling transcriptional regulation of model species with deep learning EM Cofer, J Raimundo, A Tadych, Y Yamazaki, AK Wong, CL Theesfeld, ... Genome Research 31 (6), 1097-1105, 2021 | 9 | 2021 |
| Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development J Zhou, IE Schor, V Yao, CL Theesfeld, R Marco-Ferreres, A Tadych, ... PLoS genetics 15 (9), e1008382, 2019 | 9 | 2019 |
| Tapioca: a platform for predicting de novo protein–protein interactions in dynamic contexts TJ Reed, MD Tyl, A Tadych, OG Troyanskaya, IM Cristea Nature Methods 21 (3), 488-500, 2024 | 7 | 2024 |
| Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data X Chen, Y Wang, A Cappuccio, WS Cheng, FR Zamojski, VD Nair, ... Nature computational science 3 (7), 644-657, 2023 | 7 | 2023 |
| Interpretation of an individual functional genomics experiment guided by massive public data Y Lee, AK Wong, A Tadych, BM Hartmann, CY Park, VA DeJesus, ... Nature methods 15 (12), 1049-1052, 2018 | 7 | 2018 |
| Genome-wide characterization of genetic and functional dysregulation in autism spectrum disorder A Krishnan, R Zhang, V Yao, CL Theesfeld, AK Wong, A Tadych, ... bioRxiv, 057828, 2016 | 3 | 2016 |
| DeepArk: modeling cis-regulatory codes of model species with deep learning EM Cofer, J Raimundo, A Tadych, Y Yamazaki, AK Wong, CL Theesfeld, ... bioRxiv, 2020.04. 23.058040, 2020 | 1 | 2020 |
| Automated single-cell omics end-to-end framework with data-driven batch inference Y Wang, W Thistlethwaite, A Tadych, F Ruf-Zamojski, DJ Bernard, ... bioRxiv, 2023 | | 2023 |
| Widespread impact of natural genetic variations in CRISPR/Cas9 outcomes V Li, A Tadych, A Wong, Z Zhang bioRxiv, 2023.09. 26.559657, 2023 | | 2023 |
| CROTONdb: genome-wide variant effect prediction database for CRISPR/Cas9 editing outcomes VR Li, A Tadych, AK Wong, Z Zhang | | 2023 |
| Author Correction: Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data X Chen, Y Wang, A Cappuccio, WS Cheng, FR Zamojski, VD Nair, ... Nature Computational Science 3 (9), 805, 2023 | | 2023 |
| Identifying genes and pathways linking astrocyte regional specificity to Alzheimer’s disease susceptibility R Zhang, M Knudsen, PDC Vasques, A Tadych, P Rodriguez-Rodriguez, ... bioRxiv, 2022.11. 16.515390, 2022 | | 2022 |
