| Predicting drug–protein interaction using quasi-visual question answering system S Zheng, Y Li, S Chen, J Xu, Y Yang Nature Machine Intelligence 2 (2), 134-140, 2020 | 203 | 2020 |
| AlphaFold2-aware protein–DNA binding site prediction using graph transformer Q Yuan, S Chen, J Rao, S Zheng, H Zhao, Y Yang Briefings in Bioinformatics 23 (2), bbab564, 2022 | 61 | 2022 |
| To improve protein sequence profile prediction through image captioning on pairwise residue distance map S Chen, Z Sun, L Lin, Z Liu, X Liu, Y Chong, Y Lu, H Zhao, Y Yang Journal of chemical information and modeling 60 (1), 391-399, 2019 | 57 | 2019 |
| Alignment-free metal ion-binding site prediction from protein sequence through pretrained language model and multi-task learning Q Yuan, S Chen, Y Wang, H Zhao, Y Yang Briefings in bioinformatics 23 (6), bbac444, 2022 | 25 | 2022 |
| Identifying B-cell epitopes using AlphaFold2 predicted structures and pretrained language model Y Zeng, Z Wei, Q Yuan, S Chen, W Yu, Y Lu, J Gao, Y Yang Bioinformatics 39 (4), btad187, 2023 | 10 | 2023 |
| Fast and accurate protein intrinsic disorder prediction by using a pretrained language model Y Song, Q Yuan, S Chen, K Chen, Y Zhou, Y Yang Briefings in bioinformatics 24 (4), bbad173, 2023 | 8 | 2023 |
| DiffDec: structure-aware scaffold decoration with an end-to-end diffusion model J Xie, S Chen, J Lei, Y Yang Journal of Chemical Information and Modeling 64 (7), 2554-2564, 2024 | 2 | 2024 |
| SEGEM: A fast and accurate automated protein backbone structure modeling method for cryo-EM S Chen, S Zhang, X Li, Y Liu, Y Yang 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2021 | 2 | 2021 |
| Predicting the effects of mutations on protein solubility using graph convolution network and protein language model representation J Wang, S Chen, Q Yuan, J Chen, D Li, L Wang, Y Yang Journal of Computational Chemistry 45 (8), 436-445, 2024 | | 2024 |
