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Yang Xu
Yang Xu
Machine Learning Scientist, Broad Institute
在 broadinstitute.org 的电子邮件经过验证
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引用次数
年份
Mapping the mouse cell atlas by microwell-seq
X Han, R Wang, Y Zhou, L Fei, H Sun, S Lai, A Saadatpour, Z Zhou, ...
Cell 172 (5), 1091-1107. e17, 2018
16502018
Radiation-induced DNA damage and repair effects on 3D genome organization
JT Sanders, TF Freeman, Y Xu, R Golloshi, MA Stallard, AM Hill, ...
Nature communications 11 (1), 6178, 2020
1022020
Natural Variation in Arabidopsis Cvi-0 Accession Reveals an Important Role of MPK12 in Guard Cell CO2 Signaling
L Jakobson, L Vaahtera, K Toldsepp, M Nuhkat, C Wang, YS Wang, ...
PLoS biology 14 (12), e2000322, 2016
822016
SMILE: mutual information learning for integration of single-cell omics data
Y Xu, P Das, RP McCord
Bioinformatics 38 (2), 476-486, 2022
322022
Chromosome compartmentalization alterations in prostate cancer cell lines model disease progression
R San Martin, P Das, R Dos Reis Marques, Y Xu, JM Roberts, JT Sanders, ...
Journal of Cell Biology 221 (2), e202104108, 2021
242021
CoSTA: unsupervised convolutional neural network learning for spatial transcriptomics analysis
Y Xu, RP McCord
BMC bioinformatics 22 (1), 397, 2021
242021
Diagonal integration of multimodal single-cell data: potential pitfalls and paths forward
Y Xu, RP McCord
Nature Communications 13 (1), 3505, 2022
232022
A molecular roadmap for induced multi-lineage trans-differentiation of fibroblasts by chemical combinations
X Han, H Yu, D Huang, Y Xu, A Saadatpour, X Li, L Wang, J Yu, L Pinello, ...
Cell research 27 (3), 386-401, 2017
222017
Comparative transcriptomic analysis of hematopoietic system between human and mouse by Microwell-seq
S Lai, W Huang, Y Xu, M Jiang, H Chen, C Cheng, Y Lu, H Huang, G Guo, ...
Cell discovery 4 (1), 34, 2018
212018
Loops, topologically associating domains, compartments, and territories are elastic and robust to dramatic nuclear volume swelling
JT Sanders, R Golloshi, P Das, Y Xu, PH Terry, DG Nash, J Dekker, ...
Scientific Reports 12 (1), 4721, 2022
192022
Maintenance of human haematopoietic stem and progenitor cells in vitro using a chemical cocktail
M Jiang, H Chen, S Lai, R Wang, Y Qiu, F Ye, L Fei, H Sun, Y Xu, X Jiang, ...
Cell Discovery 4 (1), 59, 2018
182018
sciCAN: single-cell chromatin accessibility and gene expression data integration via cycle-consistent adversarial network
Y Xu, E Begoli, RP McCord
NPJ Systems Biology and Applications 8 (1), 33, 2022
162022
MACA: marker-based automatic cell-type annotation for single-cell expression data
Y Xu, SJ Baumgart, CM Stegmann, S Hayat
Bioinformatics 38 (6), 1756-1760, 2022
152022
Alterations in chromosome spatial compartmentalization classify prostate cancer progression
RS Martin, P Das, RDR Marques, Y Xu, RP McCord
bioRxiv, 2021.04. 15.440056, 2021
32021
MASI enables fast model-free standardization and integration of single-cell transcriptomics data
Y Xu, R Kramann, RP McCord, S Hayat
Communications Biology 6 (1), 465, 2023
22023
SnapShot: chromosome organization
RP McCord, Y Xu, H Li, P Das, R San Martin
Molecular Cell 82 (12), 2350-2350. e1, 2022
22022
Loops, TADs, Compartments, and Territories are Elastic and Robust to Dramatic Nuclear Volume Swelling
JT Sanders, R Golloshi, PH Terry, DG Nash, Y Xu, J Dekker, RP McCord
bioRxiv, 2021.08. 20.457153, 2021
22021
Mapping human hematopoietic hierarchy at single cell resolution by Microwell-seq
S Lai, Y Xu, W Huang, M Jiang, H Chen, F Ye, R Wang, Y Qiu, X Jiang, ...
bioRxiv, 127217, 2017
22017
Integration of Unpaired Single-cell Chromatin Accessibility and Gene Expression Data via Adversarial Learning
Y Xu, AJ Strick
arXiv preprint arXiv:2104.12320, 2021
12021
3d genome structure variation across cell types captured by integrating multi-omics
Y Xu, T Shen, RP McCord
bioRxiv, 784223, 2019
12019
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