| The rice paradox: multiple origins but single domestication in Asian rice JY Choi, AE Platts, DQ Fuller, YI Hsing, RA Wing, MD Purugganan Molecular biology and evolution 34 (4), 969-979, 2017 | 248 | 2017 |
| Genomic history and ecology of the geographic spread of rice RM Gutaker, SC Groen, ES Bellis, JY Choi, IS Pires, RK Bocinsky, ... Nature plants 6 (5), 492-502, 2020 | 194 | 2020 |
| Domestication history and geographical adaptation inferred from a SNP map of African rice RS Meyer, JY Choi, M Sanches, A Plessis, JM Flowers, J Amas, K Dorph, ... Nature genetics 48 (9), 1083-1088, 2016 | 171 | 2016 |
| Double-edged sword: The evolutionary consequences of the epigenetic silencing of transposable elements JY Choi, YCG Lee PLoS genetics 16 (7), e1008872, 2020 | 100 | 2020 |
| The strength and pattern of natural selection on gene expression in rice SC Groen, I Ćalić, Z Joly-Lopez, AE Platts, JY Choi, M Natividad, K Dorph, ... Nature 578 (7796), 572-576, 2020 | 100 | 2020 |
| Natural selection shapes nucleotide polymorphism across the genome of the nematode Caenorhabditis briggsae AD Cutter, JY Choi Genome research 20 (8), 1103-1111, 2010 | 94 | 2010 |
| Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice JY Choi, ZN Lye, SC Groen, X Dai, P Rughani, S Zaaijer, ED Harrington, ... Genome biology 21, 1-27, 2020 | 92 | 2020 |
| The bracteatus pineapple genome and domestication of clonally propagated crops LY Chen, R VanBuren, M Paris, H Zhou, X Zhang, CM Wai, H Yan, ... Nature Genetics 51 (10), 1549-1558, 2019 | 79 | 2019 |
| Natural variations at the Stay-Green gene promoter control lifespan and yield in rice cultivars D Shin, S Lee, TH Kim, JH Lee, J Park, J Lee, JY Lee, LH Cho, JY Choi, ... Nature Communications 11 (1), 2819, 2020 | 78 | 2020 |
| Multiple Origin but Single Domestication Led to Oryza sativa JY Choi, MD Purugganan G3: Genes, Genomes, Genetics 8 (3), 797-803, 2018 | 69 | 2018 |
| Evolutionary epigenomics of retrotransposon-mediated methylation spreading in rice JY Choi, MD Purugganan Molecular Biology and Evolution 35 (2), 365-382, 2018 | 52 | 2018 |
| Population Genomics of Infectious and Integrated Wolbachia pipientis Genomes in Drosophila ananassae JY Choi, JE Bubnell, CF Aquadro Genome Biology and Evolution 7 (8), 2362-2382, 2015 | 41 | 2015 |
| Signatures of selection underpinning rapid coral adaptation to the world’s warmest reefs EG Smith, KM Hazzouri, JY Choi, P Delaney, M Al-Kharafi, EJ Howells, ... Science advances 8 (2), eabl7287, 2022 | 40 | 2022 |
| The complex geography of domestication of the African rice Oryza glaberrima JY Choi, M Zaidem, R Gutaker, K Dorph, RK Singh, MD Purugganan PLoS Genetics 15 (3), e1007414, 2019 | 40 | 2019 |
| Natural variation in plant telomere length is associated with flowering time JY Choi, LR Abdulkina, J Yin, IB Chastukhina, JT Lovell, IA Agabekian, ... The Plant Cell 33 (4), 1118-1134, 2021 | 37 | 2021 |
| Divergent selection and primary gene flow shape incipient speciation of a riparian tree on Hawaii Island JY Choi, M Purugganan, EA Stacy Molecular Biology and Evolution 37 (3), 695-710, 2020 | 31 | 2020 |
| The Coevolutionary Period of Wolbachia pipientis Infecting Drosophila ananassae and Its Impact on the Evolution of the Host Germline Stem Cell Regulating Genes JY Choi, CF Aquadro Molecular biology and evolution 31 (9), 2457-2471, 2014 | 30 | 2014 |
| Ancestral polymorphisms shape the adaptive radiation of Metrosideros across the Hawaiian Islands JY Choi, X Dai, O Alam, JZ Peng, P Rughani, S Hickey, E Harrington, ... Proceedings of the National Academy of Sciences 118 (37), e2023801118, 2021 | 29 | 2021 |
| Evolutionary rate covariation analysis of E-cadherin identifies Raskol as a regulator of cell adhesion and actin dynamics in Drosophila Q Raza, JY Choi, Y Li, RM O’Dowd, SC Watkins, M Chikina, Y Hong, ... PLoS Genetics 15 (2), e1007720, 2019 | 27 | 2019 |
| An inferred fitness consequence map of the rice genome Z Joly-Lopez, AE Platts, B Gulko, JY Choi, SC Groen, X Zhong, A Siepel, ... Nature plants 6 (2), 119-130, 2020 | 25 | 2020 |
