Model-based analysis of ChIP-Seq (MACS) Y Zhang, T Liu, CA Meyer, J Eeckhoute, DS Johnson, BE Bernstein, ... Genome biology 9, 1-9, 2008 | 15498 | 2008 |
Genome-wide analysis of estrogen receptor binding sites JS Carroll, CA Meyer, J Song, W Li, TR Geistlinger, J Eeckhoute, ... Nature genetics 38 (11), 1289-1297, 2006 | 1634 | 2006 |
Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1 JS Carroll, XS Liu, AS Brodsky, W Li, CA Meyer, AJ Szary, J Eeckhoute, ... Cell 122 (1), 33-43, 2005 | 1570 | 2005 |
FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription M Lupien, J Eeckhoute, CA Meyer, Q Wang, Y Zhang, W Li, JS Carroll, ... Cell 132 (6), 958-970, 2008 | 1104 | 2008 |
Androgen receptor regulates a distinct transcription program in androgen-independent prostate cancer Q Wang, W Li, Y Zhang, X Yuan, K Xu, J Yu, Z Chen, R Beroukhim, ... Cell 138 (2), 245-256, 2009 | 1074 | 2009 |
Handbook of test problems in local and global optimization CA Floudas, PM Pardalos, C Adjiman, WR Esposito, ZH Gümüs, ... Springer Science & Business Media, 2013 | 926 | 2013 |
Cistrome: an integrative platform for transcriptional regulation studies T Liu, JA Ortiz, L Taing, CA Meyer, B Lee, Y Zhang, H Shin, SS Wong, ... Genome biology 12, 1-10, 2011 | 738 | 2011 |
Sequence determinants of improved CRISPR sgRNA design H Xu, T Xiao, CH Chen, W Li, CA Meyer, Q Wu, D Wu, L Cong, F Zhang, ... Genome research 25 (8), 1147-1157, 2015 | 667 | 2015 |
Response and resistance to BET bromodomain inhibitors in triple-negative breast cancer S Shu, CY Lin, HH He, RM Witwicki, DP Tabassum, JM Roberts, ... Nature 529 (7586), 413-417, 2016 | 603 | 2016 |
Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis R Zheng, C Wan, S Mei, Q Qin, Q Wu, H Sun, CH Chen, M Brown, ... Nucleic acids research 47 (D1), D729-D735, 2019 | 596 | 2019 |
Nucleosome dynamics define transcriptional enhancers HH He, CA Meyer, H Shin, ST Bailey, G Wei, Q Wang, Y Zhang, K Xu, ... Nature genetics 42 (4), 343-347, 2010 | 552 | 2010 |
Model-based analysis of tiling-arrays for ChIP-chip WE Johnson, W Li, CA Meyer, R Gottardo, JS Carroll, M Brown, XS Liu Proceedings of the National Academy of Sciences 103 (33), 12457-12462, 2006 | 500 | 2006 |
Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse S Mei, Q Qin, Q Wu, H Sun, R Zheng, C Zang, M Zhu, J Wu, X Shi, L Taing, ... Nucleic acids research, gkw983, 2016 | 483 | 2016 |
Target analysis by integration of transcriptome and ChIP-seq data with BETA S Wang, H Sun, J Ma, C Zang, C Wang, J Wang, Q Tang, CA Meyer, ... Nature protocols 8 (12), 2502-2515, 2013 | 459 | 2013 |
GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data J Feng, CA Meyer, Q Wang, JS Liu, X Shirley Liu, Y Zhang Bioinformatics 28 (21), 2782-2788, 2012 | 455 | 2012 |
Identifying and mitigating bias in next-generation sequencing methods for chromatin biology CA Meyer, XS Liu Nature Reviews Genetics 15 (11), 709-721, 2014 | 369 | 2014 |
Transcriptional role of cyclin D1 in development revealed by a genetic–proteomic screen F Bienvenu, S Jirawatnotai, JE Elias, CA Meyer, K Mizeracka, A Marson, ... Nature 463 (7279), 374-378, 2010 | 309 | 2010 |
Global optimization in the 21st century: Advances and challenges CA Floudas, IG Akrotirianakis, S Caratzoulas, CA Meyer, J Kallrath Computers & Chemical Engineering 29 (6), 1185-1202, 2005 | 266 | 2005 |
Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification HH He, CA Meyer, SS Hu, MW Chen, C Zang, Y Liu, PK Rao, T Fei, H Xu, ... Nature methods 11 (1), 73-78, 2014 | 259 | 2014 |
Differentiation-specific histone modifications reveal dynamic chromatin interactions and partners for the intestinal transcription factor CDX2 MP Verzi, H Shin, HH He, R Sulahian, CA Meyer, RK Montgomery, ... Developmental cell 19 (5), 713-726, 2010 | 233 | 2010 |