Multimodal co-attention transformer for survival prediction in gigapixel whole slide images RJ Chen, MY Lu, WH Weng, TY Chen, DFK Williamson, T Manz, M Shady, ... Proceedings of the IEEE/CVF international conference on computer vision …, 2021 | 208 | 2021 |
OME-NGFF: a next-generation file format for expanding bioimaging data-access strategies J Moore, C Allan, S Besson, JM Burel, E Diel, D Gault, K Kozlowski, ... Nature methods 18 (12), 1496-1498, 2021 | 126* | 2021 |
OME-Zarr: a cloud-optimized bioimaging file format with international community support J Moore, D Basurto-Lozada, S Besson, J Bogovic, J Bragantini, EM Brown, ... Histochemistry and Cell Biology 160 (3), 223-251, 2023 | 43 | 2023 |
Viv: multiscale visualization of high-resolution multiplexed bioimaging data on the web T Manz, I Gold, NH Patterson, C McCallum, MS Keller, BW Herr, K Börner, ... Nature methods 19 (5), 515-516, 2022 | 42 | 2022 |
Vitessce: a framework for integrative visualization of multi-modal and spatially-resolved single-cell data MS Keller, I Gold, C McCallum, T Manz, PV Kharchenko, N Gehlenborg OSF Preprints 10, 2021 | 27 | 2021 |
Periphery plots for contextualizing heterogeneous time-based charts B Morrow, T Manz, AE Chung, N Gehlenborg, D Gotz 2019 IEEE visualization conference (VIS), 1-5, 2019 | 20 | 2019 |
Gos: a declarative library for interactive genomics visualization in Python T Manz, S L’Yi, N Gehlenborg Bioinformatics 39 (1), btad050, 2023 | 13 | 2023 |
A General Framework for Comparing Embedding Visualizations Across Class-Label Hierarchies T Manz, F Lekschas, E Greene, G Finak, N Gehlenborg | 2 | 2024 |
Vitessce: integrative visualization of multimodal and spatially-resolved single-cell data MS Keller, I Gold, C McCallum, T Manz, PV Kharchenko, N Gehlenborg OSF, 2021 | 2 | 2021 |
Any notebook served: authoring and sharing reusable interactive widgets T Manz, N Gehlenborg, N Abdennur OSF, 2024 | 1 | 2024 |
anywidget: reusable widgets for interactive analysis and visualization in computational notebooks T Manz, N Abdennur, N Gehlenborg OSF, 2024 | 1 | 2024 |
Chromoscope: interactive multiscale visualization for structural variation in human genomes S L’Yi, D Maziec, V Stevens, T Manz, A Veit, M Berselli, PJ Park, ... Nature Methods 20 (12), 1834-1835, 2023 | 1 | 2023 |
Jupyter Scatter: Interactive Exploration of Large-Scale Datasets F Lekschas, T Manz arXiv e-prints, arXiv: 2406.14397, 2024 | | 2024 |
Use-Coordination: Model, Grammar, and Library for Implementation of Coordinated Multiple Views MS Keller, T Manz, N Gehlenborg OSF, 0 | | |