A pathology atlas of the human cancer transcriptome M Uhlen, C Zhang, S Lee, E Sjöstedt, L Fagerberg, G Bidkhori, ... Science 357 (6352), eaan2507, 2017 | 3015 | 2017 |
Molecular mechanisms behind free radical scavengers function against oxidative stress F Ahmadinejad, S Geir Møller, M Hashemzadeh-Chaleshtori, G Bidkhori, ... Antioxidants 6 (3), 51, 2017 | 290 | 2017 |
Reconstruction of an integrated genome-scale co-expression network reveals key modules involved in lung adenocarcinoma G Bidkhori, Z Narimani, S Hosseini Ashtiani, A Moeini, A Nowzari-Dalini, ... PloS one 8 (7), e67552, 2013 | 189 | 2013 |
Metabolic network-based stratification of hepatocellular carcinoma reveals three distinct tumor subtypes G Bidkhori, R Benfeitas, M Klevstig, C Zhang, J Nielsen, M Uhlen, J Boren, ... Proceedings of the National Academy of Sciences 115 (50), E11874-E11883, 2018 | 172 | 2018 |
Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals S Vaga, S Lee, B Ji, A Andreasson, NJ Talley, L Agréus, G Bidkhori, ... Scientific reports 10 (1), 14977, 2020 | 110 | 2020 |
Systematic analysis of gut microbiome reveals the role of bacterial folate and homocysteine metabolism in Parkinson’s disease D Rosario, G Bidkhori, S Lee, J Bedarf, F Hildebrand, E Le Chatelier, ... Cell reports 34 (9), 2021 | 94 | 2021 |
Understanding the representative gut microbiota dysbiosis in metformin-treated type 2 diabetes patients using genome-scale metabolic modeling D Rosario, R Benfeitas, G Bidkhori, C Zhang, M Uhlen, S Shoaie, ... Frontiers in physiology 9, 775, 2018 | 82 | 2018 |
Cancer systems biology and modeling: microscopic scale and multiscale approaches A Masoudi-Nejad, G Bidkhori, SH Ashtiani, A Najafi, JH Bozorgmehr, ... Seminars in cancer biology 30, 60-69, 2015 | 61 | 2015 |
TCSBN: a database of tissue and cancer specific biological networks S Lee, C Zhang, M Arif, Z Liu, R Benfeitas, G Bidkhori, S Deshmukh, ... Nucleic acids research 46 (D1), D595-D600, 2018 | 58 | 2018 |
HomoTarget: a new algorithm for prediction of microRNA targets in Homo sapiens H Ahmadi, A Ahmadi, S Azimzadeh-Jamalkandi, MA Shoorehdeli, ... Genomics 101 (2), 94-100, 2013 | 50 | 2013 |
Genome scale modeling in systems biology: algorithms and resources A Najafi, G Bidkhori, J H Bozorgmehr, I Koch, A Masoudi-Nejad Current genomics 15 (2), 130-159, 2014 | 49 | 2014 |
Modeling of tumor progression in NSCLC and intrinsic resistance to TKI in loss of PTEN expression G Bidkhori, A Moeini, A Masoudi-Nejad PloS one 7 (10), e48004, 2012 | 49 | 2012 |
Postmortem cortical transcriptomics of Lewy body dementia reveal mitochondrial dysfunction and lack of neuroinflammation AP Rajkumar, G Bidkhori, S Shoaie, E Clarke, H Morrin, A Hye, G Williams, ... The American Journal of Geriatric Psychiatry 28 (1), 75-86, 2020 | 46 | 2020 |
Multi-omic data interpretation to repurpose subtype specific drug candidates for breast cancer B Turanli, K Karagoz, G Bidkhori, R Sinha, ML Gatza, M Uhlen, ... Frontiers in genetics 10, 420, 2019 | 46 | 2019 |
Metabolic network-based identification and prioritization of anticancer targets based on expression data in hepatocellular carcinoma G Bidkhori, R Benfeitas, E Elmas, MN Kararoudi, M Arif, M Uhlen, ... Frontiers in physiology 9, 916, 2018 | 46 | 2018 |
Characterization of heterogeneous redox responses in hepatocellular carcinoma patients using network analysis R Benfeitas, G Bidkhori, B Mukhopadhyay, M Klevstig, M Arif, C Zhang, ... EBioMedicine 40, 471-487, 2019 | 45 | 2019 |
Tamoxifen-induced apoptosis of MCF-7 cells via GPR30/PI3K/MAPKs interactions: verification by ODE modeling and RNA sequencing M Rouhimoghadam, S Safarian, JS Carroll, N Sheibani, G Bidkhori Frontiers in physiology 9, 907, 2018 | 41 | 2018 |
The acute effect of metabolic cofactor supplementation: a potential therapeutic strategy against non‐alcoholic fatty liver disease C Zhang, E Bjornson, M Arif, A Tebani, A Lovric, R Benfeitas, M Ozcan, ... Molecular systems biology 16 (4), e9495, 2020 | 37 | 2020 |
RETRACTED ARTICLE: Candidate gene prioritization A Masoudi-Nejad, A Meshkin, B Haji-Eghrari, G Bidkhori Molecular genetics and genomics 287, 679-698, 2012 | 33 | 2012 |
Low shear stress increases recombinant protein production and high shear stress increases apoptosis in human cells C Zhan, G Bidkhori, H Schwarz, M Malm, A Mebrahtu, R Field, C Sellick, ... IScience 23 (11), 2020 | 29 | 2020 |