Acquired genetic mechanisms of a multiresistant bacterium isolated from a treatment plant receiving wastewater from antibiotic production A Johnning, ERB Moore, L Svensson-Stadler, YS Shouche, DGJ Larsson, ... Applied and environmental microbiology 79 (23), 7256-7263, 2013 | 71 | 2013 |
Typing and characterization of bacteria using bottom-up tandem mass spectrometry proteomics F Boulund, R Karlsson, L Gonzales-Siles, A Johnning, N Karami, ... Molecular & Cellular Proteomics 16 (6), 1052-1063, 2017 | 64 | 2017 |
Resistance Mutations in gyrA and parC are Common in Escherichia Communities of both Fluoroquinolone-Polluted and Uncontaminated Aquatic Environments A Johnning, E Kristiansson, J Fick, B Weijdegård, DGJ Larsson Frontiers in Microbiology 6, 1355, 2015 | 62 | 2015 |
Isolation of novel IncA/C and IncN fluoroquinolone resistance plasmids from an antibiotic-polluted lake CF Flach, A Johnning, I Nilsson, K Smalla, E Kristiansson, DGJ Larsson Journal of Antimicrobial Chemotherapy 70 (10), 2709-2717, 2015 | 59 | 2015 |
Strategies to improve usability and preserve accuracy in biological sequence databases J Bengtsson‐Palme, F Boulund, R Edström, A Feizi, A Johnning, ... Proteomics 16 (18), 2454-2460, 2016 | 52 | 2016 |
A novel method to discover fluoroquinolone antibiotic resistance (qnr) genes in fragmented nucleotide sequences F Boulund, A Johnning, MB Pereira, DGJ Larsson, E Kristiansson BMC genomics 13, 1-9, 2012 | 44 | 2012 |
Discovery of species-unique peptide biomarkers of bacterial pathogens by tandem mass spectrometry-based proteotyping R Karlsson, A Thorsell, M Gomila, F Salvà-Serra, HE Jakobsson, ... Molecular & Cellular Proteomics 19 (3), 518-528, 2020 | 24 | 2020 |
Comprehensive screening of genomic and metagenomic data reveals a large diversity of tetracycline resistance genes F Berglund, ME Böhm, A Martinsson, S Ebmeyer, T Österlund, A Johnning, ... Microbial genomics 6 (11), 2020 | 21 | 2020 |
The resistomes of six carbapenem-resistant pathogens–a critical genotype–phenotype analysis A Johnning, N Karami, ET Hallbäck, V Müller, L Nyberg, MB Pereira, ... Microbial genomics 4 (11), 2018 | 21 | 2018 |
Quinolone resistance mutations in the faecal microbiota of Swedish travellers to India A Johnning, E Kristiansson, M Angelin, N Marathe, YS Shouche, ... BMC microbiology 15 (1), 1-8, 2015 | 18 | 2015 |
Cultivation-free typing of bacteria using optical DNA mapping V Müller, M Nyblom, A Johnning, M Wrande, A Dvirnas, S Kk, CG Giske, ... ACS infectious diseases 6 (5), 1076-1084, 2020 | 13 | 2020 |
An updated phylogeny of the metallo-β-lactamases F Berglund, A Johnning, DGJ Larsson, E Kristiansson Journal of Antimicrobial Chemotherapy 76 (1), 117-123, 2021 | 12 | 2021 |
Nonlinear mixed effects modeling of deterministic and stochastic dynamical systems in Wolfram Mathematica J Leander, J Almquist, A Johnning, J Larsson, M Jirstrand IFAC-PapersOnLine 54 (7), 409-414, 2021 | 10 | 2021 |
Latent antibiotic resistance genes are abundant, diverse, and mobile in human, animal, and environmental microbiomes JS Inda-Díaz, D Lund, M Parras-Moltó, A Johnning, J Bengtsson-Palme, ... Microbiome 11 (1), 1-16, 2023 | 6 | 2023 |
Large-scale characterization of the macrolide resistome reveals high diversity and several new pathogen-associated genes D Lund, N Kieffer, M Parras-Moltó, S Ebmeyer, F Berglund, A Johnning, ... Microbial Genomics 8 (1), 2022 | 4 | 2022 |
NLMEModeling: a wolfram mathematica package for nonlinear mixed effects modeling of dynamical systems J Leander, J Almquist, A Johnning, J Larsson, M Jirstrand arXiv preprint arXiv:2011.06879, 2020 | 3 | 2020 |
Combining dense and sparse labeling in optical DNA mapping E Torstensson, G Goyal, A Johnning, F Westerlund, T Ambjörnsson Plos one 16 (11), e0260489, 2021 | 2 | 2021 |
Draft genome sequence of extended-spectrum-β-lactamase-producing Escherichia coli strain CCUG 62462, isolated from a urine sample A Johnning, HE Jakobsson, F Boulund, F Salvà-Serra, ERB Moore, ... Genome Announcements 4 (6), 10.1128/genomea. 01382-16, 2016 | 2 | 2016 |
Strain-level bacterial typing directly from patient samples using optical DNA mapping M Nyblom, A Johnning, K Frykholm, M Wrande, V Müller, G Goyal, ... Communications Medicine 3 (1), 31, 2023 | 1 | 2023 |
Outbreak of OXA-48-producing Enterobacteriaceae in a neonatal intensive care unit in Western Sweden ET Hallbäck, A Johnning, S Myhrman, M Studahl, E Hentz, A Elfvin, ... European Journal of Clinical Microbiology & Infectious Diseases 42 (5), 597-605, 2023 | | 2023 |