| Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations BJ O’Roak, L Vives, S Girirajan, E Karakoc, N Krumm, BP Coe, R Levy, ... Nature 485 (7397), 246-250, 2012 | 2284 | 2012 |
| Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations BJ O'Roak, P Deriziotis, C Lee, L Vives, JJ Schwartz, S Girirajan, ... Nature genetics 43 (6), 585-589, 2011 | 1353 | 2011 |
| Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations BJ O'Roak, P Deriziotis, C Lee, L Vives, JJ Schwartz, S Girirajan, ... Nature genetics 43 (6), 585-589, 2011 | 1353 | 2011 |
| Insights into hominid evolution from the gorilla genome sequence A Scally, JY Dutheil, LDW Hillier, GE Jordan, I Goodhead, J Herrero, ... Nature 483 (7388), 169-175, 2012 | 787 | 2012 |
| The bonobo genome compared with the chimpanzee and human genomes K Prüfer, K Munch, I Hellmann, K Akagi, JR Miller, B Walenz, S Koren, ... Nature 486 (7404), 527-531, 2012 | 621 | 2012 |
| RNA–RNA interaction prediction and antisense RNA target search C Alkan, E Karakoc, JH Nadeau, SC Sahinalp, K Zhang Journal of Computational Biology 13 (2), 267-282, 2006 | 158 | 2006 |
| Detection of structural variants and indels within exome data E Karakoc, C Alkan, BJ O'roak, MY Dennis, L Vives, K Mark, MJ Rieder, ... Nature methods 9 (2), 176-178, 2012 | 146 | 2012 |
| Altered splicing of ATP6AP2 causes X-linked parkinsonism with spasticity (XPDS) O Korvatska, NS Strand, JD Berndt, T Strovas, DH Chen, JB Leverenz, ... Human molecular genetics 22 (16), 3259-3268, 2013 | 141 | 2013 |
| Integrated cross-study datasets of genetic dependencies in cancer C Pacini, JM Dempster, I Boyle, E Gonçalves, H Najgebauer, E Karakoc, ... Nature communications 12 (1), 1661, 2021 | 121 | 2021 |
| Transmission disequilibrium of small CNVs in simplex autism N Krumm, BJ O’Roak, E Karakoc, K Mohajeri, B Nelson, L Vives, ... The American Journal of Human Genetics 93 (4), 595-606, 2013 | 113 | 2013 |
| Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus B Harr, E Karakoc, R Neme, M Teschke, C Pfeifle, Ž Pezer, H Babiker, ... Scientific data 3 (1), 1-14, 2016 | 106 | 2016 |
| PICKY: a novel SVD-based NMR spectra peak picking method B Alipanahi, X Gao, E Karakoc, L Donaldson, M Li Bioinformatics 25 (12), i268-i275, 2009 | 80 | 2009 |
| The evolution and functional impact of human deletion variants shared with archaic hominin genomes YL Lin, P Pavlidis, E Karakoc, J Ajay, O Gokcumen Molecular biology and evolution 32 (4), 1008-1019, 2015 | 54 | 2015 |
| Comparative QSAR-and fragments distribution analysis of drugs, druglikes, metabolic substances, and antimicrobial compounds E Karakoc, SC Sahinalp, A Cherkasov Journal of chemical information and modeling 46 (5), 2167-2182, 2006 | 53 | 2006 |
| Distance based algorithms for small biomolecule classification and structural similarity search E Karakoc, A Cherkasov, SC Sahinalp Bioinformatics 22 (14), e243-e251, 2006 | 47 | 2006 |
| Dual-stressor selection alters eco-evolutionary dynamics in experimental communities T Hiltunen, J Cairns, J Frickel, M Jalasvuori, J Laakso, V Kaitala, S Künzel, ... Nature Ecology & Evolution 2 (12), 1974-1981, 2018 | 40 | 2018 |
| Population size changes and selection drive patterns of parallel evolution in a host–virus system J Frickel, PGD Feulner, E Karakoc, L Becks Nature communications 9 (1), 1706, 2018 | 35 | 2018 |
| Error tolerant NMR backbone resonance assignment and automated structure generation B Alipanahi, X Gao, E Karakoc, SC Li, F Balbach, G Feng, L Donaldson, ... Journal of bioinformatics and computational biology 9 (01), 15-41, 2011 | 31 | 2011 |
| Breaking a species barrier by enabling hybrid recombination GO Bozdag, J Ono, JA Denton, E Karakoc, N Hunter, JY Leu, D Greig Current biology 31 (4), R180-R181, 2021 | 30 | 2021 |
| smyRNA: a novel Ab initio ncRNA gene finder R Salari, C Aksay, E Karakoc, PJ Unrau, I Hajirasouliha, SC Sahinalp PLoS One 4 (5), e5433, 2009 | 21 | 2009 |
