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Stunted microbiota and opportunistic pathogen colonization in caesarean-section birth
Y Shao, SC Forster, E Tsaliki, K Vervier, A Strang, N Simpson, N Kumar, ...
Nature 574 (7776), 117-121, 2019
8172019
Identification of bacteria-derived HLA-bound peptides in melanoma
S Kalaora, A Nagler, D Nejman, M Alon, C Barbolin, E Barnea, ...
Nature 592 (7852), 138-143, 2021
2452021
Large-scale machine learning for metagenomics sequence classification
K Vervier, P Mahé, M Tournoud, JB Veyrieras, JP Vert
Bioinformatics 32 (7), 1023-1032, 2016
942016
Two microbiota subtypes identified in irritable bowel syndrome with distinct responses to the low FODMAP diet
K Vervier, S Moss, N Kumar, A Adoum, M Barne, H Browne, A Kaser, ...
Gut 71 (9), 1821-1830, 2022
902022
The Mouse Gastrointestinal Bacteria Catalogue enables translation between the mouse and human gut microbiotas via functional mapping
BS Beresford-Jones, SC Forster, MD Stares, G Notley, E Viciani, ...
Cell host & microbe 30 (1), 124-138. e8, 2022
732022
Host adaptation in gut Firmicutes is associated with sporulation loss and altered transmission cycle
HP Browne, A Almeida, N Kumar, K Vervier, AT Adoum, E Viciani, ...
Genome Biology 22, 1-20, 2021
402021
Functional microbiomics reveals alterations of the gut microbiome and host co‐metabolism in patients with alcoholic hepatitis
B Gao, Y Duan, S Lang, D Barupal, TC Wu, L Valdiviez, B Roberts, ...
Hepatology Communications 4 (8), 1168-1182, 2020
362020
The MITRE trial protocol: a study to evaluate the microbiome as a biomarker of efficacy and toxicity in cancer patients receiving immune checkpoint inhibitor therapy
NA Thompson, GD Stewart, SJ Welsh, GJ Doherty, MJ Robinson, ...
BMC cancer 22 (1), 99, 2022
192022
Benchmark of structured machine learning methods for microbial identification from mass-spectrometry data
K Vervier, P Mahé, JB Veyrieras, JP Vert
arXiv preprint arXiv:1506.07251, 2015
162015
Whole-genome sequencing in a family with twin boys with autism and intellectual disability suggests multimodal polygenic risk
B McKenna, T Koomar, K Vervier, J Kremsreiter, JJ Michaelson
Molecular Case Studies 4 (6), a003285, 2018
142018
Identification Of Microorganisms By Spectrometry And Structured Classification
K Vervier, P Mahe, JB Veyrieras
US Patent App. 14/387,777, 2015
142015
MetaVW: Large-scale machine learning for metagenomics sequence classification
K Vervier, P Mahé, JP Vert
Data Mining for Systems Biology: Methods and Protocols, 9-20, 2018
112018
SLINGER: large-scale learning for predicting gene expression
K Vervier, JJ Michaelson
Scientific reports 6 (1), 39360, 2016
102016
Genetic and morphological estimates of androgen exposure predict social deficits in multiple neurodevelopmental disorder cohorts
BG McKenna, Y Huang, K Vervier, D Hofammann, M Cafferata, ...
Molecular autism 12 (1), 43, 2021
72021
TiSAn: Estimating Tissue Specific Effects of Coding and Noncoding Variants.
K Vervier, M Jacob J.
Bioinformatics, 2018
72018
On learning matrices with orthogonal columns or disjoint supports
K Vervier, P Mahé, A d’Aspremont, JB Veyrieras, JP Vert
Machine Learning and Knowledge Discovery in Databases: European Conference …, 2014
72014
Functional and taxonomic comparison of mouse and human gut microbiotas using extensive culturing and metagenomics
BS Beresford-Jones, SC Forster, MD Stares, G Notley, E Viciani, ...
bioRxiv, 2021.02. 11.430759, 2021
62021
CarboLogR: a Shiny/R application for statistical analysis of bacterial utilisation of carbon sources
K Vervier, HP Browne, TD Lawley
bioRxiv, 695676, 2019
52019
Precision microbiome profiling identifies a novel biomarker predictive of Immune Checkpoint Inhibitor response in multiple cohorts and a potent therapeutic consortium of bacteria
MJ Robinson, K Vervier, S Harris, R Rabbie, D Milne, C Booth, ...
Cancer Research 81 (13_Supplement), 1783-1783, 2021
22021
Using precision microbiome profiling to develop a biomarker for immune checkpoint inhibitor response and a novel therapeutic.
M Robinson, K Vervier, A Popple, S Harris, R Hudson, D Adams, ...
Journal of Clinical Oncology 39 (15_suppl), e21546-e21546, 2021
22021
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