| The systems biology graphical notation NL Novère, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ... Nature biotechnology 27 (8), 735-741, 2009 | 1051 | 2009 |
| Integrative analysis of cell cycle control in budding yeast KC Chen, L Calzone, A Csikasz-Nagy, FR Cross, B Novak, JJ Tyson Molecular biology of the cell 15 (8), 3841-3862, 2004 | 785 | 2004 |
| BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge L Calzone, F Fages, S Soliman Bioinformatics 22 (14), 1805-1807, 2006 | 326 | 2006 |
| Mathematical modelling of cell-fate decision in response to death receptor engagement L Calzone, L Tournier, S Fourquet, D Thieffry, B Zhivotovsky, E Barillot, ... PLoS computational biology 6 (3), e1000702, 2010 | 234 | 2010 |
| Integrative modelling of the influence of MAPK network on cancer cell fate decision L Grieco, L Calzone, I Bernard-Pierrot, F Radvanyi, B Kahn-Perles, ... PLoS computational biology 9 (10), e1003286, 2013 | 200 | 2013 |
| Computational systems biology of cancer E Barillot, L Calzone, P Hupe, JP Vert, A Zinovyev CRC Press, 2013 | 163 | 2013 |
| A comprehensive modular map of molecular interactions in RB/E2F pathway L Calzone, A Gelay, A Zinovyev, F Radvanyi, E Barillot Molecular systems biology 4 (1), 0174, 2008 | 160 | 2008 |
| Atlas of Cancer Signalling Network: a systems biology resource for integrative analysis of cancer data with Google Maps I Kuperstein, E Bonnet, HA Nguyen, D Cohen, E Viara, L Grieco, ... Oncogenesis 4 (7), e160-e160, 2015 | 150 | 2015 |
| Machine learning biochemical networks from temporal logic properties L Calzone, N Chabrier-Rivier, F Fages, S Soliman Transactions on computational systems biology VI, 68-94, 2006 | 148 | 2006 |
| Mathematical modelling of molecular pathways enabling tumour cell invasion and migration DPA Cohen, L Martignetti, S Robine, E Barillot, A Zinovyev, L Calzone PLoS computational biology 11 (11), e1004571, 2015 | 138 | 2015 |
| Aberrant ERBB4-SRC signaling as a hallmark of group 4 medulloblastoma revealed by integrative phosphoproteomic profiling A Forget, L Martignetti, S Puget, L Calzone, S Brabetz, D Picard, ... Cancer cell 34 (3), 379-395. e7, 2018 | 137 | 2018 |
| Continuous time Boolean modeling for biological signaling: application of Gillespie algorithm G Stoll, E Viara, E Barillot, L Calzone BMC systems biology 6, 1-18, 2012 | 124 | 2012 |
| BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks A Zinovyev, E Viara, L Calzone, E Barillot Bioinformatics 24 (6), 876-877, 2008 | 123 | 2008 |
| MaBoSS 2.0: an environment for stochastic Boolean modeling G Stoll, B Caron, E Viara, A Dugourd, A Zinovyev, A Naldi, G Kroemer, ... Bioinformatics 33 (14), 2226-2228, 2017 | 116 | 2017 |
| Integrative multi-omics module network inference with Lemon-Tree E Bonnet, L Calzone, T Michoel PLoS computational biology 11 (2), e1003983, 2015 | 115 | 2015 |
| A modeling approach to explain mutually exclusive and co-occurring genetic alterations in bladder tumorigenesis E Remy, S Rebouissou, C Chaouiya, A Zinovyev, F Radvanyi, L Calzone Cancer research 75 (19), 4042-4052, 2015 | 113 | 2015 |
| PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling G Letort, A Montagud, G Stoll, R Heiland, E Barillot, P Macklin, A Zinovyev, ... Bioinformatics 35 (7), 1188-1196, 2019 | 109 | 2019 |
| The CoLoMoTo interactive notebook: accessible and reproducible computational analyses for qualitative biological networks A Naldi, C Hernandez, N Levy, G Stoll, PT Monteiro, C Chaouiya, ... Frontiers in physiology 9, 680, 2018 | 92 | 2018 |
| COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021 | 82 | 2021 |
| NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps I Kuperstein, DPA Cohen, S Pook, E Viara, L Calzone, E Barillot, ... BMC systems biology 7, 1-13, 2013 | 71 | 2013 |
