The energetics and physiological impact of cohesin extrusion L Vian, A Pękowska, SSP Rao, KR Kieffer-Kwon, S Jung, L Baranello, ... Cell 173 (5), 1165-1178. e20, 2018 | 542 | 2018 |
Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy A Soranno, B Buchli, D Nettels, RR Cheng, S Müller-Späth, SH Pfeil, ... Proceedings of the National Academy of Sciences 109 (44), 17800-17806, 2012 | 353 | 2012 |
De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture M Di Pierro, RR Cheng, E Lieberman Aiden, PG Wolynes, JN Onuchic Proceedings of the National Academy of Sciences 114 (46), 12126-12131, 2017 | 223 | 2017 |
Coevolutionary information, protein folding landscapes, and the thermodynamics of natural selection F Morcos, NP Schafer, RR Cheng, JN Onuchic, PG Wolynes Proceedings of the National Academy of Sciences 111 (34), 12408-12413, 2014 | 150 | 2014 |
Toward rationally redesigning bacterial two-component signaling systems using coevolutionary information RR Cheng, F Morcos, H Levine, JN Onuchic Proceedings of the National Academy of Sciences 111 (5), E563-E571, 2014 | 121 | 2014 |
Aggregation effects on the emission spectra and dynamics of model oligomers of MEH-PPV GA Sherwood, R Cheng, TM Smith, JH Werner, AP Shreve, LA Peteanu, ... The Journal of Physical Chemistry C 113 (43), 18851-18862, 2009 | 87 | 2009 |
Elucidating the druggable interface of protein− protein interactions using fragment docking and coevolutionary analysis F Bai, F Morcos, RR Cheng, H Jiang, JN Onuchic Proceedings of the National Academy of Sciences 113 (50), E8051-E8058, 2016 | 86 | 2016 |
A mechanistic study of electron transfer from the distal termini of electrode-bound, single-stranded DNAs T Uzawa, RR Cheng, RJ White, DE Makarov, KW Plaxco Journal of the American Chemical Society 132 (45), 16120-16126, 2010 | 75 | 2010 |
Exploring the role of internal friction in the dynamics of unfolded proteins using simple polymer models RR Cheng, AT Hawk, DE Makarov The Journal of Chemical Physics 138 (7), 2013 | 72 | 2013 |
Connecting the sequence-space of bacterial signaling proteins to phenotypes using coevolutionary landscapes RR Cheng, O Nordesjö, RL Hayes, H Levine, SC Flores, JN Onuchic, ... Molecular Biology and Evolution 33 (12), 3054–3064, 2016 | 64 | 2016 |
Exploring chromosomal structural heterogeneity across multiple cell lines RR Cheng, VG Contessoto, E Lieberman Aiden, PG Wolynes, M Di Pierro, ... Elife 9, e60312, 2020 | 46 | 2020 |
The length and viscosity dependence of end-to-end collision rates in single-stranded DNA T Uzawa, RR Cheng, KJ Cash, DE Makarov, KW Plaxco Biophysical journal 97 (1), 205-210, 2009 | 45 | 2009 |
Molecular Weight Effect on the formation of β Phase Poly (9, 9′-dioctylfluorene) in Dilute Solutions CW Cone, RR Cheng, DE Makarov, DA Vanden Bout The Journal of Physical Chemistry B 115 (43), 12380-12385, 2011 | 40 | 2011 |
Failure of one-dimensional Smoluchowski diffusion models to describe the duration of conformational rearrangements in floppy, diffusive molecular systems: A case study of … RR Cheng, DE Makarov Journal of Chemical Physics 134 (8), 85104, 2011 | 32 | 2011 |
The rate of intramolecular loop formation in DNA and polypeptides: the absence of the diffusion-controlled limit and fractional power-law viscosity dependence RR Cheng, T Uzawa, KW Plaxco, DE Makarov The Journal of Physical Chemistry B 113 (42), 14026-14034, 2009 | 32 | 2009 |
Universality in the timescales of internal loop formation in unfolded proteins and single-stranded oligonucleotides RR Cheng, T Uzawa, KW Plaxco, DE Makarov Biophysical journal 99 (12), 3959-3968, 2010 | 28 | 2010 |
The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome VG Contessoto, RR Cheng, A Hajitaheri, E Dodero-Rojas, MF Mello, ... Nucleic Acids Research 49 (D1), D172-D182, 2021 | 27 | 2021 |
Charge‐Site Dependent Dissociation of Hydrogen‐Rich Radical Peptide Cations upon Vacuum UV Photoexcitation JA Madsen, RR Cheng, TS Kaoud, KN Dalby, DE Makarov, JS Brodbelt Chemistry-A European Journal, 2012 | 27 | 2012 |
A combined computational and genetic approach uncovers network interactions of the cyanobacterial circadian clock JS Boyd, RR Cheng, ML Paddock, C Sancar, F Morcos, SS Golden Journal of Bacteriology 198 (18), 2439-2447, 2016 | 23 | 2016 |
Chain Length and Substituent Effects on the Formation of Excimer-Like States in Nanoaggregates of CN-PPV Model Oligomers GA Sherwood, R Cheng, K Chacon-Madrid, TM Smith, LA Peteanu, ... The Journal of Physical Chemistry C 114 (28), 12078-12089, 2010 | 22 | 2010 |