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Ryan R. Cheng
Ryan R. Cheng
Assistant Professor of Chemistry, University of Kentucky
在 uky.edu 的电子邮件经过验证 - 首页
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The energetics and physiological impact of cohesin extrusion
L Vian, A Pękowska, SSP Rao, KR Kieffer-Kwon, S Jung, L Baranello, ...
Cell 173 (5), 1165-1178. e20, 2018
5422018
Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy
A Soranno, B Buchli, D Nettels, RR Cheng, S Müller-Späth, SH Pfeil, ...
Proceedings of the National Academy of Sciences 109 (44), 17800-17806, 2012
3532012
De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture
M Di Pierro, RR Cheng, E Lieberman Aiden, PG Wolynes, JN Onuchic
Proceedings of the National Academy of Sciences 114 (46), 12126-12131, 2017
2232017
Coevolutionary information, protein folding landscapes, and the thermodynamics of natural selection
F Morcos, NP Schafer, RR Cheng, JN Onuchic, PG Wolynes
Proceedings of the National Academy of Sciences 111 (34), 12408-12413, 2014
1502014
Toward rationally redesigning bacterial two-component signaling systems using coevolutionary information
RR Cheng, F Morcos, H Levine, JN Onuchic
Proceedings of the National Academy of Sciences 111 (5), E563-E571, 2014
1212014
Aggregation effects on the emission spectra and dynamics of model oligomers of MEH-PPV
GA Sherwood, R Cheng, TM Smith, JH Werner, AP Shreve, LA Peteanu, ...
The Journal of Physical Chemistry C 113 (43), 18851-18862, 2009
872009
Elucidating the druggable interface of protein− protein interactions using fragment docking and coevolutionary analysis
F Bai, F Morcos, RR Cheng, H Jiang, JN Onuchic
Proceedings of the National Academy of Sciences 113 (50), E8051-E8058, 2016
862016
A mechanistic study of electron transfer from the distal termini of electrode-bound, single-stranded DNAs
T Uzawa, RR Cheng, RJ White, DE Makarov, KW Plaxco
Journal of the American Chemical Society 132 (45), 16120-16126, 2010
752010
Exploring the role of internal friction in the dynamics of unfolded proteins using simple polymer models
RR Cheng, AT Hawk, DE Makarov
The Journal of Chemical Physics 138 (7), 2013
722013
Connecting the sequence-space of bacterial signaling proteins to phenotypes using coevolutionary landscapes
RR Cheng, O Nordesjö, RL Hayes, H Levine, SC Flores, JN Onuchic, ...
Molecular Biology and Evolution 33 (12), 3054–3064, 2016
642016
Exploring chromosomal structural heterogeneity across multiple cell lines
RR Cheng, VG Contessoto, E Lieberman Aiden, PG Wolynes, M Di Pierro, ...
Elife 9, e60312, 2020
462020
The length and viscosity dependence of end-to-end collision rates in single-stranded DNA
T Uzawa, RR Cheng, KJ Cash, DE Makarov, KW Plaxco
Biophysical journal 97 (1), 205-210, 2009
452009
Molecular Weight Effect on the formation of β Phase Poly (9, 9′-dioctylfluorene) in Dilute Solutions
CW Cone, RR Cheng, DE Makarov, DA Vanden Bout
The Journal of Physical Chemistry B 115 (43), 12380-12385, 2011
402011
Failure of one-dimensional Smoluchowski diffusion models to describe the duration of conformational rearrangements in floppy, diffusive molecular systems: A case study of …
RR Cheng, DE Makarov
Journal of Chemical Physics 134 (8), 85104, 2011
322011
The rate of intramolecular loop formation in DNA and polypeptides: the absence of the diffusion-controlled limit and fractional power-law viscosity dependence
RR Cheng, T Uzawa, KW Plaxco, DE Makarov
The Journal of Physical Chemistry B 113 (42), 14026-14034, 2009
322009
Universality in the timescales of internal loop formation in unfolded proteins and single-stranded oligonucleotides
RR Cheng, T Uzawa, KW Plaxco, DE Makarov
Biophysical journal 99 (12), 3959-3968, 2010
282010
The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome
VG Contessoto, RR Cheng, A Hajitaheri, E Dodero-Rojas, MF Mello, ...
Nucleic Acids Research 49 (D1), D172-D182, 2021
272021
Charge‐Site Dependent Dissociation of Hydrogen‐Rich Radical Peptide Cations upon Vacuum UV Photoexcitation
JA Madsen, RR Cheng, TS Kaoud, KN Dalby, DE Makarov, JS Brodbelt
Chemistry-A European Journal, 2012
272012
A combined computational and genetic approach uncovers network interactions of the cyanobacterial circadian clock
JS Boyd, RR Cheng, ML Paddock, C Sancar, F Morcos, SS Golden
Journal of Bacteriology 198 (18), 2439-2447, 2016
232016
Chain Length and Substituent Effects on the Formation of Excimer-Like States in Nanoaggregates of CN-PPV Model Oligomers
GA Sherwood, R Cheng, K Chacon-Madrid, TM Smith, LA Peteanu, ...
The Journal of Physical Chemistry C 114 (28), 12078-12089, 2010
222010
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