I-TASSER: a unified platform for automated protein structure and function prediction A Roy, A Kucukural, Y Zhang Nature protocols 5 (4), 725-738, 2010 | 7238 | 2010 |
The I-TASSER Suite: protein structure and function prediction J Yang, R Yan, A Roy, D Xu, J Poisson, Y Zhang Nature methods 12 (1), 7, 2015 | 5963 | 2015 |
I-TASSER server for protein 3D structure prediction Y Zhang BMC bioinformatics 9 (1), 40, 2008 | 5818 | 2008 |
TM-align: a protein structure alignment algorithm based on the TM-score Y Zhang, J Skolnick Nucleic acids research 33 (7), 2302-2309, 2005 | 3316 | 2005 |
I-TASSER server: new development for protein structure and function predictions J Yang, Y Zhang Nucleic acids research 43, W174-W181, 2015 | 2351 | 2015 |
Scoring function for automated assessment of protein structure template quality Y Zhang, J Skolnick Proteins: Structure, Function, and Bioinformatics 57 (4), 702-710, 2004 | 2198 | 2004 |
Ab initio protein structure assembly using continuous structure fragments and optimized knowledge‐based force field D Xu, Y Zhang Proteins: Structure, Function, and Bioinformatics 80 (7), 1715-1735, 2012 | 1111 | 2012 |
Improving the physical realism and structural accuracy of protein models by a two-step atomic-level energy minimization D Xu, Y Zhang Biophysical journal 101 (10), 2525-2534, 2011 | 1049 | 2011 |
LOMETS: a local meta-threading-server for protein structure prediction S Wu, Y Zhang Nucleic acids research 35 (10), 3375-3382, 2007 | 976 | 2007 |
Protein–ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment J Yang, A Roy, Y Zhang Bioinformatics 29 (20), 2588-2595, 2013 | 956 | 2013 |
How significant is a protein structure similarity with TM-score= 0.5? J Xu, Y Zhang Bioinformatics 26 (7), 889-895, 2010 | 865 | 2010 |
COFACTOR: an accurate comparative algorithm for structure-based protein function annotation A Roy, J Yang, Y Zhang Nucleic acids research 40 (W1), W471-W477, 2012 | 796 | 2012 |
BioLiP: a semi-manually curated database for biologically relevant ligand–protein interactions J Yang, A Roy, Y Zhang Nucleic acids research 41 (D1), D1096-D1103, 2013 | 702 | 2013 |
Progress and challenges in protein structure prediction Y Zhang Current opinion in structural biology 18 (3), 342-348, 2008 | 697 | 2008 |
Ab initio modeling of small proteins by iterative TASSER simulations S Wu, J Skolnick, Y Zhang BMC biology 5 (1), 17, 2007 | 672 | 2007 |
Template‐based modeling and free modeling by I‐TASSER in CASP7 Y Zhang Proteins: Structure, Function, and Bioinformatics 69 (S8), 108-117, 2007 | 592 | 2007 |
COFACTOR: improved protein function prediction by combining structure, sequence and protein–protein interaction information C Zhang, PL Freddolino, Y Zhang Nucleic Acids Research 45, W291-W299, 2017 | 554 | 2017 |
I‐TASSER: Fully automated protein structure prediction in CASP8 Y Zhang Proteins: Structure, Function, and Bioinformatics 77 (S9), 100-113, 2009 | 542 | 2009 |
Protein Structure and Function Prediction Using I‐TASSER J Yang, Y Zhang Current Protocols in Bioinformatics 52, 5.8.1-5.8.15, 2015 | 538 | 2015 |
SPICKER: a clustering approach to identify near‐native protein folds Y Zhang, J Skolnick Journal of computational chemistry 25 (6), 865-871, 2004 | 487 | 2004 |