A network integration approach for drug-target interaction prediction and computational drug repositioning from heterogeneous information Y Luo, X Zhao, J Zhou, J Yang, Y Zhang, W Kuang, J Peng, L Chen, ... Nature communications 8 (1), 573, 2017 | 683 | 2017 |
An integrative drug repositioning framework discovered a potential therapeutic agent targeting COVID-19 Y Ge, T Tian, S Huang, F Wan, J Li, S Li, X Wang, H Yang, L Hong, N Wu, ... Signal transduction and targeted therapy 6 (1), 165, 2021 | 240 | 2021 |
STAIR: A generic and fully-automated method to fuse multiple sources of optical satellite data to generate a high-resolution, daily and cloud-/gap-free surface reflectance product Y Luo, K Guan, J Peng Remote Sensing of Environment 214, 87-99, 2018 | 126 | 2018 |
Enzyme function prediction using contrastive learning T Yu, H Cui, JC Li, Y Luo, G Jiang, H Zhao Science 379 (6639), 1358-1363, 2023 | 122 | 2023 |
Few-shot learning creates predictive models of drug response that translate from high-throughput screens to individual patients J Ma, SH Fong, Y Luo, CJ Bakkenist, JP Shen, S Mourragui, LFA Wessels, ... Nature Cancer 2 (2), 233-244, 2021 | 116 | 2021 |
Deriving high-spatiotemporal-resolution leaf area index for agroecosystems in the US Corn Belt using Planet Labs CubeSat and STAIR fusion data H Kimm, K Guan, C Jiang, B Peng, LF Gentry, SC Wilkin, S Wang, Y Cai, ... Remote Sensing of Environment 239, 111615, 2020 | 109 | 2020 |
ECNet is an evolutionary context-integrated deep learning framework for protein engineering Y Luo, G Jiang, T Yu, Y Liu, L Vo, H Ding, Y Su, WW Qian, H Zhao, J Peng Nature communications 12 (1), 5743, 2021 | 108 | 2021 |
When causal inference meets deep learning Y Luo, J Peng, J Ma Nature Machine Intelligence 2 (8), 426-427, 2020 | 94 | 2020 |
Deep geometric representations for modeling effects of mutations on protein-protein binding affinity X Liu, Y Luo, P Li, S Song, J Peng PLoS computational biology 17 (8), e1009284, 2021 | 83* | 2021 |
Crowdsourced mapping of unexplored target space of kinase inhibitors A Cichońska, B Ravikumar, RJ Allaway, F Wan, S Park, O Isayev, S Li, ... Nature communications 12 (1), 3307, 2021 | 66 | 2021 |
Crowdsourcing assessment of maternal blood multi-omics for predicting gestational age and preterm birth AL Tarca, BA Pataki, R Romero, M Sirota, Y Guan, R Kutum, ... Cell Reports Medicine 2 (6), 2021 | 58 | 2021 |
Sequence modeling of temporal credit assignment for episodic reinforcement learning Y Liu, Y Luo, Y Zhong, X Chen, Q Liu, J Peng arXiv preprint arXiv:1905.13420, 2019 | 40 | 2019 |
Metagenomic binning through low-density hashing Y Luo, YW Yu, J Zeng, B Berger, J Peng Bioinformatics 35 (2), 219-226, 2019 | 38 | 2019 |
DeepMask: an algorithm for cloud and cloud shadow detection in optical satellite remote sensing images using deep residual network K Xu, K Guan, J Peng, Y Luo, S Wang arXiv preprint arXiv:1911.03607, 2019 | 29 | 2019 |
Integrating thermodynamic and sequence contexts improves protein-RNA binding prediction Y Su, Y Luo, X Zhao, Y Liu, J Peng PLoS computational biology 15 (9), e1007283, 2019 | 25 | 2019 |
Characterization of SARS-CoV-2 viral diversity within and across hosts P Sashittal, Y Luo, J Peng, M El-Kebir BioRxiv, 2020.05. 07.083410, 2020 | 21 | 2020 |
STAIR 2.0: A generic and automatic algorithm to fuse modis, landsat, and Sentinel-2 to generate 10 m, daily, and cloud-/gap-free surface reflectance product Y Luo, K Guan, J Peng, S Wang, Y Huang Remote Sensing 12 (19), 3209, 2020 | 18 | 2020 |
Evolutionary context-integrated deep sequence modeling for protein engineering Y Luo, L Vo, H Ding, Y Su, Y Liu, WW Qian, H Zhao, J Peng Research in Computational Molecular Biology: 24th Annual International …, 2020 | 18 | 2020 |
Interpretable geometric deep learning via learnable randomness injection S Miao, Y Luo, M Liu, P Li International Conference on Learning Representations, 2023 | 15 | 2023 |
Next Decade’s AI-based drug development features tight integration of data and computation Y Luo, J Peng, J Ma Health Data Science, 2022 | 13 | 2022 |