The Sequence Read Archive: explosive growth of sequencing data Y Kodama, M Shumway, R Leinonen Nucleic acids research 40 (D1), D54-D56, 2012 | 979 | 2012 |
DDBJ launches a new archive database with analytical tools for next-generation sequence data E Kaminuma, J Mashima, Y Kodama, T Gojobori, O Ogasawara, K Okubo, ... Nucleic acids research 38 (suppl_1), D33-D38, 2010 | 111 | 2010 |
DNA data bank of Japan J Mashima, Y Kodama, T Fujisawa, T Katayama, Y Okuda, E Kaminuma, ... Nucleic Acids Research, gkw1001, 2016 | 105 | 2016 |
DNA data bank of Japan (DDBJ) progress report J Mashima, Y Kodama, T Kosuge, T Fujisawa, T Katayama, H Nagasaki, ... Nucleic acids research 44 (D1), D51-D57, 2016 | 100 | 2016 |
DDBJ read annotation pipeline: a cloud computing-based pipeline for high-throughput analysis of next-generation sequencing data H Nagasaki, T Mochizuki, Y Kodama, S Saruhashi, S Morizaki, ... DNA research 20 (4), 383-390, 2013 | 84 | 2013 |
DNA data bank of Japan: 30th anniversary Y Kodama, J Mashima, T Kosuge, E Kaminuma, O Ogasawara, K Okubo, ... Nucleic acids research 46 (D1), D30-D35, 2018 | 78 | 2018 |
The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data Y Kodama, J Mashima, T Kosuge, T Katayama, T Fujisawa, E Kaminuma, ... Nucleic Acids Research 43 (D1), D18-D22, 2015 | 76 | 2015 |
DDBJ progress report E Kaminuma, T Kosuge, Y Kodama, H Aono, J Mashima, T Gojobori, ... Nucleic acids research 39 (suppl_1), D22-D27, 2010 | 70 | 2010 |
DDBJ Database updates and computational infrastructure enhancement O Ogasawara, Y Kodama, J Mashima, T Kosuge, T Fujisawa Nucleic acids research 48 (D1), D45-D50, 2020 | 67 | 2020 |
DDBJ update: streamlining submission and access of human data A Fukuda, Y Kodama, J Mashima, T Fujisawa, O Ogasawara Nucleic acids research 49 (D1), D71-D75, 2021 | 59 | 2021 |
DDBJ progress report: a new submission system for leading to a correct annotation T Kosuge, J Mashima, Y Kodama, T Fujisawa, E Kaminuma, ... Nucleic acids research 42 (D1), D44-D49, 2014 | 57 | 2014 |
The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments Y Kodama, J Mashima, E Kaminuma, T Gojobori, O Ogasawara, T Takagi, ... Nucleic acids research 40 (D1), D38-D42, 2012 | 56 | 2012 |
DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data Y Kodama, J Mashima, T Kosuge, O Ogasawara Nucleic acids research 47 (D1), D69-D73, 2019 | 53 | 2019 |
Mapping and characterization of DNase I hypersensitive sites in Arabidopsis chromatin Y Kodama, S Nagaya, A Shinmyo, K Kato Plant and cell physiology 48 (3), 459-470, 2007 | 53 | 2007 |
Toward richer metadata for microbial sequences: replacing strain-level NCBI taxonomy taxids with BioProject, BioSample and Assembly records S Federhen, K Clark, T Barrett, H Parkinson, J Ostell, Y Kodama, ... Standards in genomic sciences 9, 1275-1277, 2014 | 50 | 2014 |
DDBJ new system and service refactoring O Ogasawara, J Mashima, Y Kodama, E Kaminuma, Y Nakamura, ... Nucleic acids research 41 (D1), D25-D29, 2012 | 42 | 2012 |
DNA Data Bank of Japan (DDBJ) update report 2022 Y Tanizawa, T Fujisawa, Y Kodama, T Kosuge, J Mashima, T Tanjo, ... Nucleic acids research 51 (D1), D101-D105, 2023 | 27 | 2023 |
DNA Data Bank of Japan (DDBJ) update report 2021 T Okido, Y Kodama, J Mashima, T Kosuge, T Fujisawa, O Ogasawara Nucleic acids research 50 (D1), D102-D105, 2022 | 24 | 2022 |
Biological databases at DNA Data Bank of Japan in the era of next-generation sequencing technologies Y Kodama, E Kaminuma, S Saruhashi, K Ikeo, H Sugawara, Y Tateno, ... Advances in Computational Biology, 125-135, 2010 | 16 | 2010 |
Sapporo: a workflow execution service that encourages the reuse of workflows in various languages in bioinformatics H Suetake, T Tanjo, M Ishii, BP Kinoshita, T Fujino, T Hachiya, Y Kodama, ... F1000Research 11, 2022 | 9 | 2022 |