Single-cell transcriptome atlas of murine endothelial cells J Kalucka, LPMH de Rooij, J Goveia, K Rohlenova, SJ Dumas, E Meta, ... Cell 180 (4), 764-779. e20, 2020 | 942 | 2020 |
An integrated gene expression landscape profiling approach to identify lung tumor endothelial cell heterogeneity and angiogenic candidates J Goveia, K Rohlenova, F Taverna, L Treps, LC Conradi, A Pircher, ... Cancer cell 37 (1), 21-36. e13, 2020 | 368 | 2020 |
Single-cell RNA sequencing maps endothelial metabolic plasticity in pathological angiogenesis K Rohlenova, J Goveia, M García-Caballero, A Subramanian, J Kalucka, ... Cell metabolism 31 (4), 862-877. e14, 2020 | 217 | 2020 |
International NMR-based environmental metabolomics intercomparison exercise MR Viant, DW Bearden, JG Bundy, IW Burton, TW Collette, DR Ekman, ... Environmental science & technology 43 (1), 219-225, 2009 | 171 | 2009 |
Single-cell RNA sequencing reveals renal endothelium heterogeneity and metabolic adaptation to water deprivation SJ Dumas, E Meta, M Borri, J Goveia, K Rohlenova, NV Conchinha, ... Journal of the American Society of Nephrology 31 (1), 118-138, 2020 | 148 | 2020 |
Identification of genes differentially expressed in Atlantic salmon (Salmo salar) in response to infection by Aeromonas salmonicida using cDNA microarray technology KV Ewart, JC Belanger, J Williams, T Karakach, S Penny, SCM Tsoi, ... Developmental & Comparative Immunology 29 (4), 333-347, 2005 | 143 | 2005 |
Multivariate curve resolution of time course microarray data PD Wentzell, TK Karakach, S Roy, MJ Martinez, CP Allen, ... BMC bioinformatics 7, 1-19, 2006 | 125 | 2006 |
Prebiotic effects of diet supplemented with the cultivated red seaweed Chondrus crispus or with fructo-oligo-saccharide on host immunity, colonic microbiota and … J Liu, S Kandasamy, J Zhang, CW Kirby, T Karakach, J Hafting, ... BMC complementary and alternative medicine 15, 1-12, 2015 | 91 | 2015 |
An introduction to DNA microarrays for gene expression analysis TK Karakach, RM Flight, SE Douglas, PD Wentzell Chemometrics and Intelligent Laboratory Systems 104 (1), 28-52, 2010 | 81 | 2010 |
EndoDB: a database of endothelial cell transcriptomics data S Khan, F Taverna, K Rohlenova, L Treps, V Geldhof, L de Rooij, L Sokol, ... Nucleic acids research 47 (D1), D736-D744, 2019 | 79 | 2019 |
Tumor vessel co-option probed by single-cell analysis LA Teuwen, LPMH De Rooij, A Cuypers, K Rohlenova, SJ Dumas, ... Cell reports 35 (11), 2021 | 60 | 2021 |
1H-NMR and mass spectrometric characterization of the metabolic response of juvenile Atlantic salmon (Salmo salar) to long-term handling stress TK Karakach, EC Huenupi, EC Soo, JA Walter, LOB Afonso Metabolomics 5, 123-137, 2009 | 60 | 2009 |
Pre-symptomatic activation of antioxidant responses and alterations in glucose and pyruvate metabolism in Niemann-Pick Type C1-deficient murine brain BE Kennedy, VG LeBlanc, TM Mailman, D Fice, I Burton, TK Karakach, ... PloS one 8 (12), e82685, 2013 | 58 | 2013 |
Characterization of the measurement error structure in 1D 1H NMR data for metabolomics studies TK Karakach, PD Wentzell, JA Walter Analytica Chimica Acta 636 (2), 163-174, 2009 | 57 | 2009 |
BIOMEX: an interactive workflow for (single cell) omics data interpretation and visualization F Taverna, J Goveia, TK Karakach, S Khan, K Rohlenova, L Treps, ... Nucleic acids research 48 (W1), W385-W394, 2020 | 53 | 2020 |
Dereplication, Residual Complexity, and Rational Naming: The Case of the Actaea Triterpenes F Qiu, A Imai, JB McAlpine, DC Lankin, I Burton, T Karakach, ... Journal of natural products 75 (3), 432-443, 2012 | 50 | 2012 |
Integrator restrains paraspeckles assembly by promoting isoform switching of the lncRNA NEAT1 J Barra, GS Gaidosh, E Blumenthal, F Beckedorff, MM Tayari, N Kirstein, ... Science advances 6 (27), eaaz9072, 2020 | 47 | 2020 |
NMR metabolic analysis of samples using fuzzy K‐means clustering M Čuperlović‐Culf, N Belacel, AS Culf, IC Chute, RJ Ouellette, IW Burton, ... Magnetic Resonance in Chemistry 47 (S1), S96-S104, 2009 | 47 | 2009 |
2D NMR Barcoding and Differential Analysis of Complex Mixtures for Chemical Identification: The Actaea Triterpenes F Qiu, JB McAlpine, DC Lankin, I Burton, T Karakach, SN Chen, GF Pauli Analytical chemistry 86 (8), 3964-3972, 2014 | 36 | 2014 |
Molecular characterization of zebrafish embryogenesis via DNA microarrays and multiplatform time course metabolomics studies KH Soanes, JC Achenbach, IW Burton, JPM Hui, SL Penny, TK Karakach Journal of Proteome Research 10 (11), 5102-5117, 2011 | 36 | 2011 |