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Nathan C. Sheffield
Nathan C. Sheffield
Assoc. Prof. of Public Health Genomics, Biomedical Engineering, Data Science. University of Virginia
在 virginia.edu 的电子邮件经过验证 - 首页
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引用次数
引用次数
年份
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
168182012
The accessible chromatin landscape of the human genome
RE Thurman, E Rynes, R Humbert, J Vierstra, MT Maurano, E Haugen, ...
Nature 489 (7414), 75-82, 2012
30932012
The chromatin accessibility landscape of primary human cancers
MR Corces, JM Granja, S Shams, BH Louie, JA Seoane, W Zhou, ...
Science 362 (6413), eaav1898, 2018
9872018
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS biology 9 (4), e1001046, 2011
8552011
A user's guide to the encyclopedia of DNA elements (ENCODE)
RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ...
PLoS biology 9 (4), 2011
6762011
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
L Song, Z Zhang, LL Grasfeder, AP Boyle, PG Giresi, BK Lee, ...
Genome research 21 (10), 1757-1767, 2011
6282011
ChIPmentation: fast, robust, low-input ChIP-seq for histones and transcription factors
C Schmidl, AF Rendeiro, NC Sheffield, C Bock
Nature methods 12 (10), 963-965, 2015
4792015
Single-cell DNA methylome sequencing and bioinformatic inference of epigenomic cell-state dynamics
M Farlik, NC Sheffield, A Nuzzo, P Datlinger, A Schönegger, ...
Cell reports 10 (8), 1386-1397, 2015
4572015
LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor
NC Sheffield, C Bock
Bioinformatics 32 (4), 587-589, 2016
3962016
Predicting cell-type–specific gene expression from regions of open chromatin
A Natarajan, GG Yardımcı, NC Sheffield, GE Crawford, U Ohler
Genome research 22 (9), 1711-1722, 2012
2952012
The DNA methylation landscape of glioblastoma disease progression shows extensive heterogeneity in time and space
J Klughammer, B Kiesel, T Roetzer, N Fortelny, A Nemc, KH Nenning, ...
Nature medicine 24 (10), 1611-1624, 2018
2632018
Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions
NC Sheffield, RE Thurman, L Song, A Safi, JA Stamatoyannopoulos, ...
Genome research 23 (5), 777-788, 2013
2632013
A comparative analysis of mitochondrial genomes in Coleoptera (Arthropoda: Insecta) and genome descriptions of six new beetles
NC Sheffield, H Song, SL Cameron, MF Whiting
Molecular biology and evolution 25 (11), 2499-2509, 2008
2622008
DNA methylation heterogeneity defines a disease spectrum in Ewing sarcoma
NC Sheffield, G Pierron, J Klughammer, P Datlinger, A Schönegger, ...
Nature medicine 23 (3), 386-395, 2017
2292017
Epigenome mapping reveals distinct modes of gene regulation and widespread enhancer reprogramming by the oncogenic fusion protein EWS-FLI1
EM Tomazou, NC Sheffield, C Schmidl, M Schuster, A Schönegger, ...
Cell reports 10 (7), 1082-1095, 2015
2232015
Nonstationary evolution and compositional heterogeneity in beetle mitochondrial phylogenomics
NC Sheffield, H Song, SL Cameron, MF Whiting
Systematic Biology 58 (4), 381-394, 2009
1782009
When phylogenetic assumptions are violated: base compositional heterogeneity and among‐site rate variation in beetle mitochondrial phylogenomics
H Song, NC Sheffield, SL Cameron, KB Miller, MF Whiting
Systematic Entomology 35 (3), 429-448, 2010
1612010
Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection
Y Shibata, NC Sheffield, O Fedrigo, CC Babbitt, M Wortham, AK Tewari, ...
PLoS genetics 8 (6), e1002789, 2012
1602012
GA4GH: International policies and standards for data sharing across genomic research and healthcare
HL Rehm, AJH Page, L Smith, JB Adams, G Alterovitz, LJ Babb, ...
Cell genomics 1 (2), 2021
1492021
Multi-omics of single cells: strategies and applications
C Bock, M Farlik, NC Sheffield
Trends in biotechnology 34 (8), 605-608, 2016
1422016
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