Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis JS Johnson, DJ Spakowicz, BY Hong, LM Petersen, P Demkowicz, ... Nature communications 10 (1), 5029, 2019 | 1500 | 2019 |
The real cost of sequencing: scaling computation to keep pace with data generation P Muir, S Li, S Lou, D Wang, DJ Spakowicz, L Salichos, J Zhang, ... Genome biology 17, 1-9, 2016 | 490 | 2016 |
Longitudinal multi-omics of host–microbe dynamics in prediabetes W Zhou, MR Sailani, K Contrepois, Y Zhou, S Ahadi, SR Leopold, ... Nature 569 (7758), 663-671, 2019 | 455 | 2019 |
The production of myco-diesel hydrocarbons and their derivatives by the endophytic fungus Gliocladium roseum (NRRL 50072) GA Strobel, B Knighton, K Kluck, Y Ren, T Livinghouse, M Griffin, ... Microbiology 154 (11), 3319-3328, 2008 | 306 | 2008 |
Integrative personal omics profiles during periods of weight gain and loss BD Piening, W Zhou, K Contrepois, H Röst, GJG Urban, T Mishra, ... Cell systems 6 (2), 157-170. e8, 2018 | 186 | 2018 |
Hypoxylon sp., an Endophyte of Persea indica, Producing 1,8-Cineole and Other Bioactive Volatiles with Fuel Potential AR Tomsheck, GA Strobel, E Booth, B Geary, D Spakowicz, B Knighton, ... Microbial ecology 60, 903-914, 2010 | 156 | 2010 |
Functional, structural, and chemical changes in myosin associated with hydrogen peroxide treatment of skeletal muscle fibers E Prochniewicz, DA Lowe, DJ Spakowicz, LA Higgins, K O'Conor, ... American Journal of Physiology-Cell Physiology 294 (2), C613-C626, 2008 | 138 | 2008 |
Volatile organic compound production by organisms in the genus Ascocoryne and a re-evaluation of myco-diesel production by NRRL 50072 MA Griffin, DJ Spakowicz, TA Gianoulis, SA Strobel Microbiology 156 (12), 3814-3829, 2010 | 108 | 2010 |
Change in neutrophil to lymphocyte ratio during immunotherapy treatment is a non-linear predictor of patient outcomes in advanced cancers M Li, D Spakowicz, J Burkart, S Patel, M Husain, K He, EM Bertino, ... Journal of cancer research and clinical oncology 145, 2541-2546, 2019 | 96 | 2019 |
Genomic Analysis of the Hydrocarbon-Producing, Cellulolytic, Endophytic Fungus Ascocoryne sarcoides TA Gianoulis, MA Griffin, DJ Spakowicz, BF Dunican, CJ Alpha, A Sboner, ... PLoS Genetics 8 (3), e1002558, 2012 | 94 | 2012 |
Identification of a fungal 1, 8-cineole synthase from Hypoxylon sp. with specificity determinants in common with the plant synthases JJ Shaw, T Berbasova, T Sasaki, K Jefferson-George, DJ Spakowicz, ... Journal of Biological Chemistry 290 (13), 8511-8526, 2015 | 92 | 2015 |
Changes in actin structural transitions associated with oxidative inhibition of muscle contraction E Prochniewicz, D Spakowicz, DD Thomas Biochemistry 47 (45), 11811-11817, 2008 | 59 | 2008 |
An endophytic Myrothecium inundatum producing volatile organic compounds D Banerjee, GA Strobel, B Booth, J Sears, D Spakowicz, S Busse | 58 | 2010 |
Biosynthesis and genomic analysis of medium-chain hydrocarbon production by the endophytic fungal isolate Nigrograna mackinnonii E5202H JJ Shaw, DJ Spakowicz, RS Dalal, JH Davis, NA Lehr, BF Dunican, ... Applied microbiology and biotechnology 99, 3715-3728, 2015 | 57 | 2015 |
Inferring the role of the microbiome on survival in patients treated with immune checkpoint inhibitors: causal modeling, timing, and classes of concomitant medications D Spakowicz, R Hoyd, M Muniak, M Husain, JS Bassett, L Wang, ... BMC cancer 20, 1-13, 2020 | 51 | 2020 |
Biatriospora (Ascomycota: Pleosporales) is an ecologically diverse genus including facultative marine fungi and endophytes with biotechnological potential M Kolařík, DJ Spakowicz, R Gazis, J Shaw, A Kubátová, A Nováková, ... Plant systematics and evolution 303, 35-50, 2017 | 38 | 2017 |
Bone metastases, skeletal-related events, and survival in patients with metastatic non–small cell lung cancer treated with immune checkpoint inhibitors A Qin, S Zhao, A Miah, L Wei, S Patel, A Johns, M Grogan, EM Bertino, ... Journal of the National Comprehensive Cancer Network 19 (8), 915-921, 2021 | 36 | 2021 |
Biosynthesis of hydrocarbons and volatile organic compounds by fungi: bioengineering potential DJ Spakowicz, SA Strobel Applied microbiology and biotechnology 99, 4943-4951, 2015 | 30 | 2015 |
Checkpoint inhibitor immunotherapy toxicity and overall survival among older adults with advanced cancer AC Johns, L Wei, M Grogan, R Hoyd, JFP Bridges, SH Patel, M Li, ... Journal of geriatric oncology 12 (5), 813-819, 2021 | 25 | 2021 |
Endophyte strain NRRL 50072 producing volatile organics is a species of Ascocoryne G Strobel, A Tomsheck, B Geary, D Spakowicz, S Strobel, S Mattner, ... Mycology 1 (3), 187-194, 2010 | 24 | 2010 |