| Bioprospecting Trichoderma: A Systematic Roadmap to Screen Genomes and Natural Products for Biocontrol Applications TA Rush, HK Shrestha, M Gopalakrishnan Meena, MK Spangler, JC Ellis, ... Frontiers in Fungal Biology 2, 716511, 2021 | 39 | 2021 |
| Meta-omics-aided isolation of an elusive anaerobic arsenic-methylating soil bacterium K Viacava, J Qiao, A Janowczyk, S Poudel, N Jacquemin, KL Meibom, ... The ISME journal 16 (7), 1740-1749, 2022 | 30 | 2022 |
| Advances and perspectives in discovery and functional analysis of small secreted proteins in plants XL Hu, H Lu, MM Hassan, J Zhang, G Yuan, PE Abraham, HK Shrestha, ... Horticulture research 8, 2021 | 29 | 2021 |
| Metaproteomics reveals insights into microbial structure, interactions, and dynamic regulation in defined communities as they respond to environmental disturbance HK Shrestha, MR Appidi, MI Villalobos Solis, J Wang, DL Carper, ... BMC microbiology 21, 1-17, 2021 | 22 | 2021 |
| A lysate proteome engineering strategy for enhancing cell-free metabolite production DC Garcia, JLN Dinglasan, H Shrestha, PE Abraham, RL Hettich, ... Metabolic Engineering Communications 12, e00162, 2021 | 20 | 2021 |
| Proteomic and metabolic disturbances in lignin-modified Brachypodium distachyon J Barros, HK Shrestha, JC Serrani-Yarce, NL Engle, PE Abraham, ... The Plant Cell 34 (9), 3339-3363, 2022 | 17 | 2022 |
| Formation, characterization and modeling of emergent synthetic microbial communities J Wang, DL Carper, LH Burdick, HK Shrestha, MR Appidi, PE Abraham, ... Computational and Structural Biotechnology Journal 19, 1917-1927, 2021 | 17 | 2021 |
| Towards engineering ectomycorrhization into switchgrass bioenergy crops via a lectin receptor‐like kinase Z Qiao, TB Yates, HK Shrestha, NL Engle, A Flanagan, JL Morrell‐Falvey, ... Plant Biotechnology Journal 19 (12), 2454-2468, 2021 | 15 | 2021 |
| A viable new strategy for the discovery of peptide proteolytic cleavage products in plant-microbe interactions MI Villalobos Solis, S Poudel, C Bonnot, HK Shrestha, RL Hettich, ... Molecular Plant-Microbe Interactions 33 (10), 1177-1188, 2020 | 11 | 2020 |
| Morphine and high-fat diet differentially alter the gut microbiota composition and metabolic function in lean versus obese mice JA Blakeley-Ruiz, CS McClintock, HK Shrestha, S Poudel, ZK Yang, ... ISME communications 2 (1), 66, 2022 | 6 | 2022 |
| The promises, challenges, and opportunities of omics for studying the plant holobiont DL Carper, MR Appidi, S Mudbhari, HK Shrestha, RL Hettich, ... Microorganisms 10 (10), 2013, 2022 | 4 | 2022 |
| Bacterial homologs of progestin and AdipoQ receptors (PAQRs) affect membrane energetics homeostasis but not fluidity MV Melchionna, JM Gullett, E Bouveret, HK Shrestha, PE Abraham, ... Journal of Bacteriology 204 (4), e00583-21, 2022 | 4 | 2022 |
| Lectin receptor-like kinase signaling during engineered ectomycorrhiza colonization H Shrestha, T Yao, Z Qiao, W Muchero, RL Hettich, JG Chen, ... Cells 12 (7), 1082, 2023 | 3 | 2023 |
| Expression quantitative trait loci mapping identified PtrXB38 as a key hub gene in adventitious root development in Populus T Yao, J Zhang, TB Yates, HK Shrestha, NL Engle, R Ployet, C John, ... New Phytologist 239 (6), 2248-2264, 2023 | 2 | 2023 |
| Proteomics reveals pathways linked to septoria canker resistance and susceptibility in Populus trichocarpa RR Lenz, HK Shrestha, AA Carrell, J Labbé, RL Hettich, PE Abraham, ... Frontiers in Analytical Science 2, 1020111, 2022 | 2 | 2022 |
| Multi-omic characterization of bifunctional peroxidase 4-coumarate 3-hydroxylase knockdown in Brachypodium distachyon provides insights into lignin modification … HK Shrestha, Y Fichman, NL Engle, TJ Tschaplinski, R Mittler, RA Dixon, ... Frontiers in Plant Science 13, 908649, 2022 | 1 | 2022 |
| Profiling Mouse Brain Single-Cell-Type Proteomes Via Adeno-Associated Virus-Mediated Proximity Labeling and Mass Spectrometry HK Shrestha, H Sun, J Wang, J Peng Mass Spectrometry Based Single Cell Proteomics, 115-132, 2024 | | 2024 |
| Profiling Protein–Protein Interactions in the Human Brain by Refined Cofractionation Mass Spectrometry HK Shrestha, DG Lee, Z Wu, Z Wang, Y Fu, X Wang, GE Serrano, ... Journal of proteome research 23 (4), 1221-1231, 2024 | | 2024 |
| PROTEOMIC PROFILING FOR ANTHRACYCLINE-ASSOCIATED CARDIOMYOPATHY AMONG CHILDHOOD CANCER SURVIVORS: A REPORT FROM THE ST. JUDE LIFETIME COHORT Y Sapkota, S Poudel, H Shrestha, C Im, S Dixon, M Ehrhardt, ... PEDIATRIC BLOOD & CANCER 70, S128-S128, 2023 | | 2023 |
| What are the roles of SSPs in regulating ECM symbiosis in response to biotic and abiotic nutritional signals in trees? C Bonnot, HK Shrestha, A Chartoire, A Hénocq, C Gaumétou, A Kohler, ... JOURNÉES 2022 SYMBIPHYT, 2022 | | 2022 |
