Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury N Farbehi, R Patrick, A Dorison, M Xaymardan, V Janbandhu, ... Elife 8, e43882, 2019 | 445 | 2019 |
Single cell sequencing reveals endothelial plasticity with transient mesenchymal activation after myocardial infarction LS Tombor, D John, SF Glaser, G Luxán, E Forte, M Furtado, N Rosenthal, ... Nature communications 12 (1), 681, 2021 | 169 | 2021 |
Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk AN Combes, B Phipson, KT Lawlor, A Dorison, R Patrick, L Zappia, ... Development 146 (12), dev178673, 2019 | 136 | 2019 |
Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart R Vidal, JUG Wagner, C Braeuning, C Fischer, R Patrick, L Tombor, ... JCI insight 4 (22), 2019 | 110 | 2019 |
Hif-1a suppresses ROS-induced proliferation of cardiac fibroblasts following myocardial infarction V Janbandhu, V Tallapragada, R Patrick, Y Li, D Abeygunawardena, ... Cell Stem Cell 29 (2), 281-297. e12, 2022 | 82 | 2022 |
Sierra: discovery of differential transcript usage from polyA-captured single-cell RNA-seq data R Patrick, DT Humphreys, V Janbandhu, A Oshlack, JWK Ho, RP Harvey, ... Genome biology 21, 1-27, 2020 | 63 | 2020 |
PhosphoPICK: modelling cellular context to map kinase-substrate phosphorylation events R Patrick, KA Lê Cao, B Kobe, M Bodén Bioinformatics 31 (3), 382-389, 2015 | 46 | 2015 |
Identification of active signaling pathways by integrating gene expression and protein interaction data MH Kabir, R Patrick, JWK Ho, MD O’Connor BMC systems biology 12, 77-87, 2018 | 37 | 2018 |
Nkx2. 5 marks angioblasts that contribute to hemogenic endothelium of the endocardium and dorsal aorta L Zamir, R Singh, E Nathan, R Patrick, O Yifa, Y Yahalom-Ronen, AA Arraf, ... Elife 6, e20994, 2017 | 32 | 2017 |
Predicting the dynamics of protein abundance AM Mehdi, R Patrick, TL Bailey, M Bodén Molecular & Cellular Proteomics 13 (5), 1330-1340, 2014 | 24 | 2014 |
PDGFRα signaling in cardiac fibroblasts modulates quiescence, metabolism and self-renewal, and promotes anatomical and functional repair NS Asli, M Xaymardan, E Forte, AJ Waardenberg, J Cornwell, ... BioRxiv, 225979, 2017 | 21 | 2017 |
Macrophage ACE2 is necessary for SARS-CoV-2 replication and subsequent cytokine responses that restrict continued virion release LI Labzin, KY Chew, K Eschke, X Wang, T Esposito, CJ Stocks, J Rae, ... Science Signaling 16 (782), eabq1366, 2023 | 15 | 2023 |
Prediction of kinase-specific phosphorylation sites through an integrative model of protein context and sequence R Patrick, C Horin, B Kobe, KA Lê Cao, M Bodén Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1864 (11), 1599-1608, 2016 | 14 | 2016 |
Correction: Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk (doi: 10.1242/dev. 178673) AN Combes, B Phipson, KT Lawlor, A Dorison, R Patrick, L Zappia, ... Development 146 (13), dev182162, 2019 | 13 | 2019 |
PhosphoPICK-SNP: quantifying the effect of amino acid variants on protein phosphorylation R Patrick, B Kobe, KA Lê Cao, M Bodén Bioinformatics 33 (12), 1773-1781, 2017 | 13 | 2017 |
Mapping the stabilome: a novel computational method for classifying metabolic protein stability R Patrick, KAL Cao, M Davis, B Kobe, M Bodén BMC systems biology 6, 1-15, 2012 | 13 | 2012 |
Cardiac fibroblast heterogeneity and dynamics through the lens of single-cell dual ‘omics RP Harvey, R Patrick, V Janbandhu, O Contreras Cardiovascular Research 118 (6), 1380-1382, 2022 | 3 | 2022 |
Extracellular Matrix Protein-1 as a Mediator of Inflammation-Induced Fibrosis After Myocardial Infarction SA Hardy, L Liesinger, R Patrick, M Poettler, L Rech, J Gindlhuber, ... Basic to Translational Science 8 (12), 1539-1554, 2023 | 1 | 2023 |
Quantitative trait and transcriptome analysis of genetic complexity underpinning cardiac interatrial septation in mice using an advanced intercross line MM Marjaneh, EP Kirk, R Patrick, D Alankarage, DT Humphreys, ... eLife 12, e83606, 2023 | 1 | 2023 |
Quantitative trait and transcriptome analysis of genetic complexity underpinning cardiac interatrial septation in mice using an advanced intercross line MM Moradi, EP Kirk, R Patrick, A Dimuthu, DT Humphreys, DMN Gonzalo, ... Elife 12, 2023 | 1 | 2023 |