| Secondary structure across the bacterial transcriptome reveals versatile roles in mRNA regulation and function C Del Campo, A Bartholomäus, I Fedyunin, Z Ignatova PLoS genetics 11 (10), e1005613, 2015 | 203 | 2015 |
| Early IFN-α signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19 B Krämer, R Knoll, L Bonaguro, M ToVinh, J Raabe, ... Immunity 54 (11), 2650-2669. e14, 2021 | 189 | 2021 |
| Bacteria differently regulate mRNA abundance to specifically respond to various stresses A Bartholomäus, I Fedyunin, P Feist, C Sin, G Zhang, A Valleriani, ... Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2016 | 95 | 2016 |
| Discharging tRNAs: a tug of war between translation and detoxification in Escherichia coli I Avcilar-Kucukgoze, A Bartholomäus, JA Cordero Varela, RFX Kaml, ... Nucleic acids research 44 (17), 8324-8334, 2016 | 60 | 2016 |
| Germline AGO2 mutations impair RNA interference and human neurological development D Lessel, DM Zeitler, MRF Reijnders, A Kazantsev, F Hassani Nia, ... Nature communications 11 (1), 5797, 2020 | 59 | 2020 |
| Mapping the non-standardized biases of ribosome profiling A Bartholomäus, C Del Campo, Z Ignatova Biological chemistry 397 (1), 23-35, 2016 | 58 | 2016 |
| The terrestrial plastisphere: diversity and polymer-colonizing potential of plastic-associated microbial communities in soil J MacLean, S Mayanna, LG Benning, F Horn, A Bartholomäus, Y Wiesner, ... Microorganisms 9 (9), 1876, 2021 | 46 | 2021 |
| HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes JC Kasmanas, A Bartholomäus, FB Corrêa, T Tal, N Jehmlich, G Herberth, ... Nucleic Acids Research 49 (D1), D743-D750, 2021 | 45 | 2021 |
| smORFer: a modular algorithm to detect small ORFs in prokaryotes A Bartholomäus, B Kolte, A Mustafayeva, I Goebel, S Fuchs, D Benndorf, ... Nucleic Acids Research 49 (15), e89-e89, 2021 | 29 | 2021 |
| Characterization of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection clusters based on integrated genomic surveillance, outbreak analysis and contact … A Walker, T Houwaart, P Finzer, L Ehlkes, A Tyshaieva, M Damagnez, ... Clinical Infectious Diseases 74 (6), 1039-1046, 2022 | 22 | 2022 |
| Recovery of 197 eukaryotic bins reveals major challenges for eukaryote genome reconstruction from terrestrial metagenomes JP Saraiva, A Bartholomäus, RB Toscan, P Baldrian, U Nunes da Rocha Molecular Ecology Resources 23 (5), 1066-1076, 2023 | 10 | 2023 |
| Early human impact on lake cyanobacteria revealed by a Holocene record of sedimentary ancient DNA EC Nwosu, A Brauer, ME Monchamp, S Pinkerneil, A Bartholomäus, ... Communications Biology 6 (1), 72, 2023 | 10 | 2023 |
| MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes MK Nata’ala, AP Avila Santos, J Coelho Kasmanas, A Bartholomäus, ... Environmental Microbiome 17 (1), 57, 2022 | 10 | 2022 |
| Nocardioides alcanivorans sp. nov., a novel hexadecane-degrading species isolated from plastic waste J Mitzscherling, J MacLean, D Lipus, A Bartholomäus, K Mangelsdorf, ... International journal of systematic and evolutionary microbiology 72 (4), 005319, 2022 | 10 | 2022 |
| The Microbiome Associated with the Reef Builder Neogoniolithon sp. in the Eastern Mediterranean S Gefen-Treves, A Bartholomäus, F Horn, AB Zaborowski, D Tchernov, ... Microorganisms 9 (7), 1374, 2021 | 6 | 2021 |
| Paenalcaligenes niemegkensis sp. nov., a novel species of the family Alcaligenaceae isolated from plastic waste J Mitzscherling, J MacLean, D Lipus, A Bartholomäus, K Mangelsdorf, ... International Journal of Systematic and Evolutionary Microbiology 72 (4), 005333, 2022 | 5 | 2022 |
| Codon resolution analysis of ribosome profiling data A Bartholomäus, Z Ignatova Ribosome Profiling: Methods and Protocols, 251-268, 2021 | 5 | 2021 |
| Clay‐associated microbial communities and their relevance for a nuclear waste repository in the Opalinus Clay rock formation J Mitzscherling, S Genderjahn, AM Schleicher, A Bartholomäus, ... MicrobiologyOpen 12 (4), e1370, 2023 | 4 | 2023 |
| Metagenome-assembled genomes indicate that antimicrobial resistance genes are highly prevalent among urban bacteria and multidrug and glycopeptide resistances are ubiquitous in … S Magnúsdóttir, JP Saraiva, A Bartholomäus, M Soheili, RB Toscan, ... Frontiers in Microbiology 14, 1037845, 2023 | 4 | 2023 |
| OrtSuite: from genomes to prediction of microbial interactions within targeted ecosystem processes JP Saraiva, A Bartholomäus, R Kallies, M Gomes, M Bicalho, ... Life science alliance 4 (12), 2021 | 4 | 2021 |
