Data2Dynamics: a modeling environment tailored to parameter estimation in dynamical systems A Raue, B Steiert, M Schelker, C Kreutz, T Maiwald, H Hass, J Vanlier, ... Bioinformatics 31 (21), 3558-3560, 2015 | 252 | 2015 |
A Bayesian approach to targeted experiment design J Vanlier, CA Tiemann, PAJ Hilbers, NAW van Riel Bioinformatics 28 (8), 1136-1142, 2012 | 140 | 2012 |
Parameter uncertainty in biochemical models described by ordinary differential equations J Vanlier, CA Tiemann, PAJ Hilbers, NAW van Riel Mathematical biosciences 246 (2), 305-314, 2013 | 139 | 2013 |
Driving the Model to Its Limit: Profile Likelihood Based Model Reduction T Maiwald, H Hass, B Steiert, J Vanlier, R Engesser, A Raue, F Kipkeew, ... PLOS ONE 11 (9), e0162366, 2016 | 97 | 2016 |
An integrated strategy for prediction uncertainty analysis J Vanlier, CA Tiemann, PAJ Hilbers, NAW van Riel Bioinformatics 28 (8), 1130-1135, 2012 | 93 | 2012 |
Optimal experiment design for model selection in biochemical networks J Vanlier, CA Tiemann, PAJ Hilbers, NAW van Riel BMC systems biology 8 (1), 1, 2014 | 54 | 2014 |
Parameter trajectory analysis to identify treatment effects of pharmacological interventions CA Tiemann, J Vanlier, MH Oosterveer, AK Groen, PA Hilbers, ... PLoS Comput Biol 9 (8), e1003166, 2013 | 42 | 2013 |
Parameter adaptations during phenotype transitions in progressive diseases C Tiemann, J Vanlier, P Hilbers, N van Riel BMC systems biology 5 (1), 174, 2011 | 29 | 2011 |
BISEN: Biochemical simulation environment J Vanlier, F Wu, F Qi, KC Vinnakota, Y Han, RK Dash, F Yang, DA Beard Bioinformatics 25 (6), 836-837, 2009 | 20 | 2009 |
Model Based Targeting of IL-6-Induced Inflammatory Responses in Cultured Primary Hepatocytes to Improve Application of the JAK Inhibitor Ruxolitinib S Sobotta, A Raue, X Huang, J Vanlier, A Jünger, S Bohl, U Albrecht, ... Frontiers in physiology 8, 775, 2017 | 18 | 2017 |
Computational modeling of mitochondrial energy transduction JPJ Schmitz, J Vanlier, NAW van Riel, JAL Jeneson Critical Reviews™ in Biomedical Engineering 39 (5), 2011 | 13 | 2011 |
Applications of analysis of dynamic adaptations in parameter trajectories NAW van Riel, CA Tiemann, J Vanlier, PAJ Hilbers Interface focus 3 (2), 20120084, 2013 | 8 | 2013 |
Uncertainty analysis in systems biology J Vanlier Technische Universiteit Eindhoven, 2014 | 7 | 2014 |
Using predictive differences to design experiments for model selection J Vanlier, CA Tiemann, J Timmer, PAJ Hilbers, NAW van Riel | | 2014 |
Optimal Experiment Design for Model Selection in Biochemical Networks (Supplement) J Vanlier, CA Tiemann, PAJ Hilbers, NAW van Riel | | 2013 |
A novel modelling approach to analyze complex metabolic pathway dynamics; application to LXR activated lipoprotein metabolism CA Tiemann, J Vanlier, MH Oosterveer, PAJ Hilbers, AK Groen, NAW Riel | | 2013 |
PS9-44. Unravelling the kinetics of insulin signalling in skeletal muscle cells CC Oncu, J Vanlier, P Hilbers, N van Riel Nederlands Tijdschrift voor Diabetologie 10 (3), 129-129, 2012 | | 2012 |
Challenges and opportunities for modeling signal transduction pathways using immunohistochemistry data C Çölmekçi Öncü, J Vanlier, PAJ Hilbers, NAW van Riel | | 2012 |
Challenges and opportunities for modeling signal transduction pathways using immunohistochemistry data CCÇ Öncü, JJ Vanlier, PAJP Hilbers | | 2012 |
Targeted experiment design using the posterior predictive distribution J Vanlier, CA Tiemann, PAJ Hilbers, NAW van Riel | | 2012 |