Genome-scale algorithm design V Mäkinen, D Belazzougui, F Cunial, AI Tomescu Cambridge University Press, 2015 | 178 | 2015 |
Composite repetition-aware data structures D Belazzougui, F Cunial, T Gagie, N Prezza, M Raffinot Combinatorial Pattern Matching: 26th Annual Symposium, CPM 2015, Ischia …, 2015 | 77 | 2015 |
Versatile succinct representations of the bidirectional Burrows-Wheeler transform D Belazzougui, F Cunial, J Kärkkäinen, V Mäkinen European Symposium on Algorithms, 133-144, 2013 | 67 | 2013 |
Linear-time string indexing and analysis in small space D Belazzougui, F Cunial, J Kärkkäinen, V Mäkinen ACM Transactions on Algorithms (TALG) 16 (2), 1-54, 2020 | 35 | 2020 |
Representing the suffix tree with the CDAWG D Belazzougui, F Cunial 28th Annual Symposium on Combinatorial Pattern Matching 78, 7:1--7:13, 2017 | 30 | 2017 |
Fast label extraction in the CDAWG D Belazzougui, F Cunial International Symposium on String Processing and Information Retrieval, 161-175, 2017 | 25 | 2017 |
Indexed matching statistics and shortest unique substrings D Belazzougui, F Cunial String Processing and Information Retrieval: 21st International Symposium …, 2014 | 23 | 2014 |
Fully-functional bidirectional burrows-wheeler indexes and infinite-order de bruijn graphs D Belazzougui, F Cunial 30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019), 2019 | 18 | 2019 |
LAF: logic alignment free and its application to bacterial genomes classification E Weitschek, F Cunial, G Felici BioData mining 8 (1), 39, 2015 | 18 | 2015 |
Cue: a deep-learning framework for structural variant discovery and genotyping V Popic, C Rohlicek, F Cunial, I Hajirasouliha, D Meleshko, K Garimella, ... Nature methods 20 (4), 559-568, 2023 | 17 | 2023 |
A framework for space-efficient string kernels D Belazzougui, F Cunial Algorithmica 79 (3), 857-883, 2017 | 15 | 2017 |
Linear-time string indexing and analysis in small space D Belazzougui, F Cunial, J Kärkkäinen, V Mäkinen arXiv preprint arXiv:1609.06378, 2016 | 14 | 2016 |
A framework for space-efficient variable-order Markov models F Cunial, J Alanko, D Belazzougui Bioinformatics 35 (22), 4607-4616, 2019 | 12* | 2019 |
A framework for space-efficient read clustering in metagenomic samples J Alanko, F Cunial, D Belazzougui, V Mäkinen BMC Bioinformatics 18 (3), 59, 2017 | 11 | 2017 |
Fast matching statistics in small space D Belazzougui, F Cunial, O Denas 17th International Symposium on Experimental Algorithms (SEA 2018) 103, 2018 | 10 | 2018 |
Space-efficient detection of unusual words D Belazzougui, F Cunial International Symposium on String Processing and Information Retrieval, 222-233, 2015 | 10 | 2015 |
Flexible indexing of repetitive collections D Belazzougui, F Cunial, T Gagie, N Prezza, M Raffinot Unveiling Dynamics and Complexity: 13th Conference on Computability in …, 2017 | 8 | 2017 |
Table compression by record intersections A Apostolico, F Cunial, V Kaul Data Compression Conference (dcc 2008), 13-22, 2008 | 8 | 2008 |
A framework for space-efficient string kernels D Belazzougui, F Cunial Annual Symposium on Combinatorial Pattern Matching, 13-25, 2015 | 7 | 2015 |
Genome-scale algorithm design A Tomescu, V Mäkinen, F Cunial, D Belazzougui Cambridge, UK: Cambridge Univ. Press, 2015 | 7 | 2015 |