| Wisdom of crowds for robust gene network inference D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ... Nature methods 9 (8), 796-804, 2012 | 1798 | 2012 |
| HIV-1 persistence in CD4+ T cells with stem cell–like properties MJ Buzon, H Sun, C Li, A Shaw, K Seiss, Z Ouyang, E Martin-Gayo, ... Nature medicine 20 (2), 139-142, 2014 | 481 | 2014 |
| Long-term antiretroviral treatment initiated at primary HIV-1 infection affects the size, composition, and decay kinetics of the reservoir of HIV-1-infected CD4 T cells MJ Buzon, E Martin-Gayo, F Pereyra, Z Ouyang, H Sun, JZ Li, M Piovoso, ... Journal of virology 88 (17), 10056-10065, 2014 | 314 | 2014 |
| Niche-specific reprogramming of epigenetic landscapes drives myeloid cell diversity in nonalcoholic steatohepatitis JS Seidman, TD Troutman, M Sakai, A Gola, NJ Spann, H Bennett, ... Immunity 52 (6), 1057-1074. e7, 2020 | 311 | 2020 |
| Clonal expansion of genome-intact HIV-1 in functionally polarized Th1 CD4+ T cells GQ Lee, N Orlova-Fink, K Einkauf, FZ Chowdhury, X Sun, S Harrington, ... The Journal of clinical investigation 127 (7), 2689-2696, 2017 | 290 | 2017 |
| Liver-derived signals sequentially reprogram myeloid enhancers to initiate and maintain Kupffer cell identity M Sakai, TD Troutman, JS Seidman, Z Ouyang, NJ Spann, Y Abe, KM Ego, ... Immunity 51 (4), 655-670. e8, 2019 | 281 | 2019 |
| Fingerprint matching using ridges J Feng, Z Ouyang, A Cai Pattern Recognition 39 (11), 2131-2140, 2006 | 135 | 2006 |
| Brain expression quantitative trait locus and network analyses reveal downstream effects and putative drivers for brain-related diseases N de Klein, EA Tsai, M Vochteloo, D Baird, Y Huang, CY Chen, ... Nature genetics 55 (3), 377-388, 2023 | 123 | 2023 |
| Anti-apoptotic protein BIRC5 maintains survival of HIV-1-infected CD4+ T cells HH Kuo, R Ahmad, GQ Lee, C Gao, HR Chen, Z Ouyang, MJ Szucs, ... Immunity 48 (6), 1183-1194. e5, 2018 | 122 | 2018 |
| Th1/17 polarization of CD4 T cells supports HIV-1 persistence during antiretroviral therapy H Sun, D Kim, X Li, M Kiselinova, Z Ouyang, L Vandekerckhove, H Shang, ... Journal of virology 89 (22), 11284-11293, 2015 | 107 | 2015 |
| Potent cell-intrinsic immune responses in dendritic cells facilitate HIV-1-specific T cell immunity in HIV-1 elite controllers E Martin-Gayo, MJ Buzon, Z Ouyang, T Hickman, J Cronin, D Pimenova, ... PLoS pathogens 11 (6), e1004930, 2015 | 98 | 2015 |
| Innate immune activity correlates with CD4 T cell-associated HIV-1 DNA decline during latency-reversing treatment with panobinostat R Olesen, S Vigano, TA Rasmussen, OS Søgaard, Z Ouyang, M Buzon, ... Journal of virology 89 (20), 10176-10189, 2015 | 91 | 2015 |
| Transcriptional changes during naturally acquired Zika virus infection render dendritic cells highly conducive to viral replication X Sun, S Hua, HR Chen, Z Ouyang, K Einkauf, S Tse, K Ard, A Ciaranello, ... Cell reports 21 (12), 3471-3482, 2017 | 84 | 2017 |
| Cx3cr1-deficient microglia exhibit a premature aging transcriptome S Gyoneva, R Hosur, D Gosselin, B Zhang, Z Ouyang, AC Cotleur, ... Life science alliance 2 (6), 2019 | 78 | 2019 |
| Circulating CXCR5+ CXCR3+ PD-1lo Tfh-like cells in HIV-1 controllers with neutralizing antibody breadth E Martin-Gayo, J Cronin, T Hickman, Z Ouyang, M Lindqvist, KE Kolb, ... JCI insight 2 (2), 2017 | 63 | 2017 |
| Transcriptomic and epigenetic mechanisms underlying myeloid diversity in the lung E Sajti, VM Link, Z Ouyang, NJ Spann, E Westin, CE Romanoski, ... Nature immunology 21 (2), 221-231, 2020 | 61 | 2020 |
| Chronic peripheral inflammation causes a region-specific myeloid response in the central nervous system P Süß, A Hoffmann, T Rothe, Z Ouyang, W Baum, O Staszewski, G Schett, ... Cell Reports 30 (12), 4082-4095. e6, 2020 | 59 | 2020 |
| Prolonged antiretroviral therapy preserves HIV-1-specific CD8 T cells with stem cell-like properties S Vigano, J Negron, Z Ouyang, ES Rosenberg, BD Walker, M Lichterfeld, ... Journal of virology 89 (15), 7829-7840, 2015 | 48 | 2015 |
| A reproducibility-based computational framework identifies an inducible, enhanced antiviral state in dendritic cells from HIV-1 elite controllers E Martin-Gayo, MB Cole, KE Kolb, Z Ouyang, J Cronin, SW Kazer, ... Genome biology 19, 1-21, 2018 | 40 | 2018 |
| Metabolic pathway activation distinguishes transcriptional signatures of CD8+ T cells from HIV-1 elite controllers FZ Chowdhury, Z Ouyang, M Buzon, BD Walker, M Lichterfeld, GY Xu Aids 32 (18), 2669-2677, 2018 | 36 | 2018 |
