| Actionable cytopathogenic host responses of human alveolar type 2 cells to SARS-CoV-2 RM Hekman, AJ Hume, RK Goel, KM Abo, J Huang, BC Blum, RB Werder, ... Molecular cell 80 (6), 1104-1122. e9, 2020 | 98 | 2020 |
| BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain R Pourhaghighi, PEA Ash, S Phanse, F Goebels, LZM Hu, S Chen, ... Cell Systems 10 (4), 333-350. e14, 2020 | 62 | 2020 |
| Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery PC Havugimana, RK Goel, S Phanse, A Youssef, D Padhorny, ... Nature Communications 13 (1), 4043, 2022 | 37 | 2022 |
| A bi-level heuristic solution for the nurse scheduling problem based on shift-swapping A Youssef, S Senbel 2018 IEEE 8th annual computing and communication workshop and conference …, 2018 | 22 | 2018 |
| Parallelized multidimensional analytic framework applied to mammary epithelial cells uncovers regulatory principles in EMT I Paul, D Bolzan, A Youssef, KA Gagnon, H Hook, G Karemore, ... Nature Communications 14 (1), 688, 2023 | 10 | 2023 |
| Exploring trends and themes in bioinformatics literature using topic modeling and temporal analysis A Youssef, A Rich 2018 IEEE Long Island Systems, Applications and Technology Conference (LISAT …, 2018 | 5 | 2018 |
| Dynamic remodeling of Escherichia coli interactome in response to environmental perturbations A Youssef, F Bian, NS Paniikov, M Crovella, A Emili Proteomics, 2200404, 2023 | 2 | 2023 |
| A multi-tiered map of EMT defines major transition points and identifies vulnerabilities I Paul, D Bolzan, A Youssef, KA Gagnon, H Hook, G Karemore, ... bioRxiv, 2021.06. 01.446492, 2021 | 2 | 2021 |
| DESP demixes cell-state profiles from dynamic bulk molecular measurements A Youssef, I Paul, M Crovella, A Emili Cell Reports Methods 4 (3), 2024 | | 2024 |
| DESP: Demixing Cell State Profiles from Dynamic Bulk Molecular Measurements AE Ahmed Youssef, Indranil Paul, Mark Crovella bioRxiv, 2023 | | 2023 |
