FusionCatcher – a tool for finding somatic fusion genes in paired-end RNA-sequencing data D. Nicorici, M. Satalan, H. Edgren, S. Kangaspeska, A. Murumagi, O ... http://biorxiv.org/content/early/2014/11/19/011650, 2014 | 396* | 2014 |
Identification of fusion genes in breast cancer by paired-end RNA-sequencing H Edgren, A Murumagi, S Kangaspeska, D Nicorici, V Hongisto, K Kleivi, ... Genome biology 12, 1-13, 2011 | 388 | 2011 |
Systematic analysis of microRNAs targeting the androgen receptor in prostate cancer cells P Östling, SK Leivonen, A Aakula, P Kohonen, R Mäkelä, Z Hagman, ... Cancer research 71 (5), 1956-1967, 2011 | 319 | 2011 |
Gene-expression profiling predicts recurrence in Dukes’ C colorectal cancer D Arango, P Laiho, A Kokko, P Alhopuro, H Sammalkorpi, R Salovaara, ... Gastroenterology 129 (3), 874-884, 2005 | 157 | 2005 |
Global Gene Expression Profile of Human Cord Blood–Derived CD133+ Cells T Jaatinen, H Hemmoranta, S Hautaniemi, J Niemi, D Nicorici, J Laine, ... Stem cells 24 (3), 631-641, 2006 | 154 | 2006 |
The gene expression signature of genomic instability in breast cancer is an independent predictor of clinical outcome JK Habermann, J Doering, S Hautaniemi, UJ Roblick, NK Bündgen, ... International journal of cancer 124 (7), 1552-1564, 2009 | 140 | 2009 |
CIP2A signature reveals the MYC dependency of CIP2A-regulated phenotypes and its clinical association with breast cancer subtypes M Niemelä, O Kauko, H Sihto, JP Mpindi, D Nicorici, P Pernilä, ... Oncogene 31 (39), 4266-4278, 2012 | 98 | 2012 |
MicroRNA expression profiling reveals miRNA families regulating specific biological pathways in mouse frontal cortex and hippocampus J Juhila, T Sipilä, K Icay, D Nicorici, P Ellonen, A Kallio, E Korpelainen, ... PloS one 6 (6), e21495, 2011 | 98 | 2011 |
Reanalysis of RNA-sequencing data reveals several additional fusion genes with multiple isoforms S Kangaspeska, S Hultsch, H Edgren, D Nicorici, A Murumägi, ... PloS one 7 (10), e48745, 2012 | 89 | 2012 |
Transcriptional profiling reflects shared and unique characters for CD34+ and CD133+ cells H Hemmoranta, S Hautaniemi, J Niemi, D Nicorici, J Laine, O Yli-Harja, ... Stem cells and development 15 (6), 839-851, 2006 | 49 | 2006 |
Time‐series nasal epithelial transcriptomics during natural pollen exposure in healthy subjects and allergic patients P Mattila, J Renkonen, S Toppila‐Salmi, V Parviainen, S Joenväärä, ... Allergy 65 (2), 175-183, 2010 | 48 | 2010 |
Analysis of signaling pathways in 90 cancer cell lines by protein lysate array K Natarajan Mendes, D Nicorici, D Cogdell, I Tabus, O Yli-Harja, R Guerra, ... Journal of proteome research 6 (7), 2753-2767, 2007 | 42 | 2007 |
Segmentation of DNA into coding and noncoding regions based on recursive entropic segmentation and stop-codon statistics D Nicorici, J Astola EUrasiP Journal on advances in signal Processing 2004, 1-11, 2004 | 33 | 2004 |
Dissection of signaling pathways in fourteen breast cancer cell lines using reverse-phase protein lysate microarray M Akkiprik, D Nicorici, D Cogdell, YJ Jia, A Hategan, I Tabus, O Yli-Harja, ... Technology in cancer research & treatment 5 (6), 543-551, 2006 | 32 | 2006 |
Adrenals contribute to growth of castration-resistant VCaP prostate cancer xenografts R Huhtaniemi, R Oksala, M Knuuttila, A Mehmood, E Aho, TD Laajala, ... The American journal of pathology 188 (12), 2890-2901, 2018 | 23 | 2018 |
Finding borders between coding and noncoding DNA regions using recursive segmentation and statistics of stop codons D Nicorici, JA Berger, J Astola, SK Mitra Proceedings of the 2003 Finnish Signal Processing Symposium, FINSIG'03 …, 2003 | 19 | 2003 |
Information divergence measures-for detection of borders between coding and noncoding DNA regions using recursive entropic segmentation D Nicorici, J Astola IEEE Workshop on Statistical Signal Processing, 2003, 577-580, 2003 | 12 | 2003 |
Computational identification of exons in DNA with a hidden Markov model D Nicorici, J Astola, I Tabus Work shop on Genomic Signal Processing and Statistics, 2002 | 10 | 2002 |
Exploration of extracellular vesicle miRNAs, targeted mRNAs and pathways in prostate cancer: relation to disease status and progression M Puhka, L Thierens, D Nicorici, T Forsman, T Mirtti, T af Hällström, ... Cancers 14 (3), 532, 2022 | 9 | 2022 |
An MDL method for finding large domains of similarly expressed genes D Nicorici, O Yli-Harja, J Astola Proceedings of Workshop on Genomic Signal Processing and Statistics, GENSIPS …, 2004 | 4 | 2004 |