Perturb-Seq: dissecting molecular circuits with scalable single-cell RNA profiling of pooled genetic screens A Dixit, O Parnas, B Li, J Chen, CP Fulco, L Jerby-Arnon, ND Marjanovic, ... cell 167 (7), 1853-1866. e17, 2016 | 1405 | 2016 |
Local regulation of gene expression by lncRNA promoters, transcription and splicing JM Engreitz, JE Haines, EM Perez, G Munson, J Chen, M Kane, ... Nature 539 (7629), 452-455, 2016 | 1212 | 2016 |
Optimal-transport analysis of single-cell gene expression identifies developmental trajectories in reprogramming G Schiebinger, J Shu, M Tabaka, B Cleary, V Subramanian, A Solomon, ... Cell 176 (4), 928-943. e22, 2019 | 783 | 2019 |
The NORAD lncRNA assembles a topoisomerase complex critical for genome stability M Munschauer, CT Nguyen, K Sirokman, CR Hartigan, L Hogstrom, ... Nature 561 (7721), 132-136, 2018 | 344 | 2018 |
Simultaneous generation of many RNA-seq libraries in a single reaction AA Shishkin, G Giannoukos, A Kucukural, D Ciulla, M Busby, C Surka, ... Nature methods 12 (4), 323-325, 2015 | 274 | 2015 |
Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs J Chen, AA Shishkin, X Zhu, S Kadri, I Maza, M Guttman, JH Hanna, ... Genome biology 17, 1-17, 2016 | 157 | 2016 |
Microbiota modulate transcription in the intestinal epithelium without remodeling the accessible chromatin landscape JG Camp, CL Frank, CR Lickwar, H Guturu, T Rube, AM Wenger, J Chen, ... Genome research 24 (9), 1504-1516, 2014 | 133 | 2014 |
A quantitative framework for characterizing the evolutionary history of mammalian gene expression J Chen, R Swofford, J Johnson, BB Cummings, N Rogel, K Lindblad-Toh, ... Genome research 29 (1), 53-63, 2019 | 94 | 2019 |
Changes in nucleosome occupancy associated with metabolic alterations in aged mammalian liver IM Bochkis, D Przybylski, J Chen, A Regev Cell reports 9 (3), 996-1006, 2014 | 80 | 2014 |
Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection CJ Ye, J Chen, AC Villani, M Subramaniam, RE Gate, T Bhangale, ... Genome Research 28 (12), 1812-1825, 2018 | 69 | 2018 |
PRISM offers a comprehensive genomic approach to transcription factor function prediction AM Wenger, SL Clarke, H Guturu, J Chen, BT Schaar, CY McLean, ... Genome Research, 2013 | 38 | 2013 |
Publisher Correction: The NORAD lncRNA assembles a topoisomerase complex critical for genome stability M Munschauer, CT Nguyen, K Sirokman, CR Hartigan, L Hogstrom, ... Nature 563 (7733), E32, 2018 | 20 | 2018 |
Automated discovery of tissue-targeting enhancers and transcription factors from binding motif and gene function data G Tuteja, KB Moreira, T Chung, J Chen, AM Wenger, G Bejerano PLoS Computational Biology 10 (1), e1003449, 2014 | 10 | 2014 |
Evolution of gene expression across brain regions in behaviourally divergent deer mice AF Kautt, J Chen, CL Lewarch, C Hu, K Turner, JM Lassance, F Baier, ... Molecular Ecology, e17270, 2023 | | 2023 |