Computational correction of copy number effect improves specificity of CRISPR–Cas9 essentiality screens in cancer cells RM Meyers, JG Bryan, JM McFarland, BA Weir, AE Sizemore, H Xu, ... Nature genetics 49 (12), 1779-1784, 2017 | 1638 | 2017 |
Discovering the anticancer potential of non-oncology drugs by systematic viability profiling SM Corsello, RT Nagari, RD Spangler, J Rossen, M Kocak, JG Bryan, ... Nature cancer 1 (2), 235-248, 2020 | 608 | 2020 |
Improved estimation of cancer dependencies from large-scale RNAi screens using model-based normalization and data integration JM McFarland, ZV Ho, G Kugener, JM Dempster, PG Montgomery, ... Nature communications 9 (1), 4610, 2018 | 347 | 2018 |
An embryonic diapause-like adaptation with suppressed Myc activity enables tumor treatment persistence E Dhimolea, R de Matos Simoes, D Kansara, A Al’Khafaji, J Bouyssou, ... Cancer cell 39 (2), 240-256. e11, 2021 | 189 | 2021 |
Genome-scale screens identify factors regulating tumor cell responses to natural killer cells M Sheffer, E Lowry, N Beelen, M Borah, SNA Amara, CC Mader, JA Roth, ... Nature Genetics 53 (8), 1196-1206, 2021 | 68 | 2021 |
Genome-scale functional genomics identify genes preferentially essential for multiple myeloma cells compared to other neoplasias R de Matos Simoes, R Shirasaki, SL Downey-Kopyscinski, GM Matthews, ... Nature cancer 4 (5), 754-773, 2023 | 17 | 2023 |
Interactive or static reports to guide clinical interpretation of cancer genomics SW Gray, J Gagan, E Cerami, AM Cronin, H Uno, N Oliver, C Lowenstein, ... Journal of the American Medical Informatics Association 25 (5), 458-464, 2018 | 16 | 2018 |
Weighted classification cascades for optimizing discovery significance in the higgsml challenge L Mackey, J Bryan, MY Mo NIPS 2014 Workshop on High-energy Physics and Machine Learning, 129-134, 2015 | 7 | 2015 |
Routine Estimation of Dissolved Organic Matter Sources Using Fluorescence Data and Linear Least Squares J Bryan, P Hoff, CL Osburn ACS ES&T Water 3 (8), 2073-2082, 2023 | 4 | 2023 |
Likelihood ratio statistics for gene set enrichment in Alzheimer's disease pathways J Bryan, A Mandan, G Kamat, WK Gottschalk, A Badea, KJ Adams, ... Alzheimer's & Dementia 17 (4), 561-573, 2021 | 4 | 2021 |
Systematic characterization of genes representing preferential molecular vulnerabilities for myeloma cells compared to other neoplasias-implications for the biology and … RDM Simoes, R Shirasaki, SL Downey-Kopyscinski, G Matthews, H Yiguo, ... Blood 134, 4407, 2019 | 4 | 2019 |
Smaller p-values in genomics studies using distilled auxiliary information JG Bryan, PD Hoff Biostatistics 24 (1), 193-208, 2023 | 3* | 2023 |
Linear Source Apportionment using Generalized Least Squares JG Bryan, PD Hoff, CL Osburn Technometrics, 1-16, 2024 | 1 | 2024 |
Comments on contemporary uses of machine learning for electronic health records J Bryan, D Li North Carolina Medical Journal 85 (4), 2024 | 1 | 2024 |
Opportunities and challenges for analyzing cancer data at the inter-and intra-institutional levels J Wu, J Bryan, SM Rubinstein, L Wang, M Lenoue-Newton, R Zuhour, ... JCO Precision Oncology 4, 743-756, 2020 | 1 | 2020 |
A compromise criterion for weighted least squares estimates J Bryan, H Zhou, D Li arXiv preprint arXiv:2404.00753, 2024 | | 2024 |
Advanced Topics in Introductory Statistics J Bryan Duke University, 2023 | | 2023 |
Large scale viability screening with PRISM underscores non-inhibitory properties of small molecules L de Waal, K Larpenteur, L Wang, C Zhu, J Bryan, M Kocak, C Aghia, ... Cancer Research 82 (12_Supplement), 1883-1883, 2022 | | 2022 |
The multirank likelihood for semiparametric canonical correlation analysis JG Bryan, J Niles-Weed, PD Hoff arXiv preprint arXiv:2112.07465, 2021 | | 2021 |
Large scale phenotypic screening using PRISM, integrated with functional genomic screening and transcriptional profiling accelerates target identification of cytotoxic small … K Larpenteur, L de Waal, L Wang, M Kocak, J Bryan, S Bender, S Barkho, ... MOLECULAR CANCER THERAPEUTICS 18 (12), 2019 | | 2019 |