Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012 | 9375 | 2012 |
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation S Koren, BP Walenz, K Berlin, JR Miller, NH Bergman, AM Phillippy Genome research 27 (5), 722-736, 2017 | 5110 | 2017 |
A framework for human microbiome research nature 486 (7402), 215-221, 2012 | 2365 | 2012 |
Mash: fast genome and metagenome distance estimation using MinHash BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ... Genome biology 17 (1), 1-14, 2016 | 2003 | 2016 |
Nanopore sequencing and assembly of a human genome with ultra-long reads M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ... Nature biotechnology 36 (4), 338-345, 2018 | 1678 | 2018 |
Assembly algorithms for next-generation sequencing data JR Miller, S Koren, G Sutton Genomics 95 (6), 315-327, 2010 | 1500 | 2010 |
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes TJ Treangen, BD Ondov, S Koren, AM Phillippy Genome biology 15, 1-15, 2014 | 1301 | 2014 |
Hybrid error correction and de novo assembly of single-molecule sequencing reads S Koren, MC Schatz, BP Walenz, J Martin, JT Howard, G Ganapathy, ... Nature biotechnology 30 (7), 693-700, 2012 | 1148 | 2012 |
The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022 | 1143 | 2022 |
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing K Berlin, S Koren, CS Chin, JP Drake, JM Landolin, AM Phillippy Nature biotechnology 33 (6), 623-630, 2015 | 1022 | 2015 |
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ... Nature biotechnology 37 (10), 1155-1162, 2019 | 1008 | 2019 |
GAGE: A critical evaluation of genome assemblies and assembly algorithms SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ... Genome Research 22 (3), 557-567, 2012 | 858 | 2012 |
Towards complete and error-free genome assemblies of all vertebrate species A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ... Nature 592 (7856), 737-746, 2021 | 837 | 2021 |
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013 | 757 | 2013 |
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly VA Schneider, T Graves-Lindsay, K Howe, N Bouk, HC Chen, PA Kitts, ... Genome research 27 (5), 849-864, 2017 | 747 | 2017 |
Aggressive assembly of pyrosequencing reads with mates JR Miller, AL Delcher, S Koren, E Venter, BP Walenz, A Brownley, ... Bioinformatics 24 (24), 2818-2824, 2008 | 657 | 2008 |
The bonobo genome compared with the chimpanzee and human genomes K Prüfer, K Munch, I Hellmann, K Akagi, JR Miller, B Walenz, S Koren, ... Nature 486 (7404), 527-531, 2012 | 625 | 2012 |
Assemblathon 1: A competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011 | 608 | 2011 |
Telomere-to-telomere assembly of a complete human X chromosome KH Miga, S Koren, A Rhie, MR Vollger, A Gershman, A Bzikadze, ... Nature 585 (7823), 79-84, 2020 | 599 | 2020 |
Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies A Rhie, BP Walenz, S Koren, AM Phillippy Genome biology 21 (1), 1-27, 2020 | 553 | 2020 |