A map of human genome variation from population-scale sequencing 1000 Genomes Project Consortium Nature 467 (7319), 1061-1073, 2010 | 8819 | 2010 |
Accurate whole human genome sequencing using reversible terminator chemistry DR Bentley, S Balasubramanian, HP Swerdlow, GP Smith, J Milton, ... Nature 456 (7218), 53-59, 2008 | 5099 | 2008 |
A comprehensive catalogue of somatic mutations from a human cancer genome ED Pleasance, RK Cheetham, PJ Stephens, DJ McBride, SJ Humphray, ... Nature 463 (7278), 191-196, 2010 | 2038 | 2010 |
Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications X Chen, O Schulz-Trieglaff, R Shaw, B Barnes, F Schlesinger, M Källberg, ... Bioinformatics 32 (8), 1220-1222, 2016 | 1683 | 2016 |
SSAHA: a fast search method for large DNA databases Z Ning, AJ Cox, JC Mullikin Genome research 11 (10), 1725-1729, 2001 | 1294 | 2001 |
Haplotype Estimation Using Sequencing Reads O Delaneau, B Howie, AJ Cox, JF Zagury, J Marchini The American Journal of Human Genetics 93 (4), 687-696, 2013 | 426 | 2013 |
Toward the $1000 human genome ST Bennett, C Barnes, A Cox, L Davies, C Brown Pharmacogenomics 6 (4), 373-382, 2005 | 385 | 2005 |
Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer EP Murchison, OB Schulz-Trieglaff, Z Ning, LB Alexandrov, MJ Bauer, ... Cell 148 (4), 780-791, 2012 | 361 | 2012 |
Genomic diversity among drug sensitive and multidrug resistant isolates of Mycobacterium tuberculosis with identical DNA fingerprints S Niemann, CU Köser, S Gagneux, C Plinke, S Homolka, H Bignell, ... PLoS One 4 (10), e7407, 2009 | 189 | 2009 |
NxTrim: optimized trimming of Illumina mate pair reads J O’Connell, O Schulz-Trieglaff, E Carlson, MM Hims, NA Gormley, ... Bioinformatics 31 (12), 2035-2037, 2015 | 180 | 2015 |
Large-scale compression of genomic sequence databases with the Burrows–Wheeler transform AJ Cox, MJ Bauer, T Jakobi, G Rosone Bioinformatics 28 (11), 1415-1419, 2012 | 174 | 2012 |
CNAseg—a novel framework for identification of copy number changes in cancer from second-generation sequencing data S Ivakhno, T Royce, AJ Cox, DJ Evers, RK Cheetham, S Tavaré Bioinformatics 26 (24), 3051-3058, 2010 | 132 | 2010 |
Lightweight algorithms for constructing and inverting the BWT of string collections MJ Bauer, AJ Cox, G Rosone Theoretical Computer Science 483, 134-148, 2013 | 107 | 2013 |
Data processing system and methods F Garcia, K Maisinger, S Tanner, J Moon, T Mann, ML Parkinson, AJ Cox, ... US Patent 8,965,076, 2015 | 106 | 2015 |
Stability of Householder QR factorization for weighted least squares problems AJ Cox, NJ Higham Numerical Analysis, 57-73, 1997 | 69 | 1997 |
Accuracy and stability of the null space method for solving the equality constrained least squares problem AJ Cox, NJ Higham BIT Numerical Mathematics 39 (1), 34-50, 1999 | 63 | 1999 |
Lightweight BWT construction for very large string collections MJ Bauer, AJ Cox, G Rosone Combinatorial Pattern Matching: 22nd Annual Symposium, CPM 2011, Palermo …, 2011 | 59 | 2011 |
BEETL-fastq: a searchable compressed archive for DNA reads L Janin, O Schulz-Trieglaff, AJ Cox Bioinformatics 30 (19), 2796-2801, 2014 | 53 | 2014 |
Deep Learning-Based Variant Classifier OB Schulz-trieglaff, AJ Cox, F Kai-How US Patent App. 16/247,487, 2019 | 45* | 2019 |
AKT: ancestry and kinship toolkit R Arthur, O Schulz-Trieglaff, AJ Cox, J O’Connell Bioinformatics 33 (1), 142-144, 2016 | 41 | 2016 |