关注
Yuba Raj Bhandari
Yuba Raj Bhandari
Research Associate, Johns Hopkins University
在 jhmi.edu 的电子邮件经过验证
标题
引用次数
引用次数
年份
Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography
JR Stagno, Y Liu, YR Bhandari, CE Conrad, S Panja, M Swain, L Fan, ...
Nature 541 (7636), 242-246, 2017
2962017
Aging-like spontaneous epigenetic silencing facilitates Wnt activation, stemness, and BrafV600E-induced tumorigenesis
Y Tao, B Kang, DA Petkovich, YR Bhandari, J In, G Stein-O'Brien, X Kong, ...
Cancer cell 35 (2), 315-328. e6, 2019
1312019
Structural differences between Pri-miRNA paralogs promote alternative drosha cleavage and expand target repertoires
X Bofill-De Ros, WK Kasprzak, Y Bhandari, L Fan, Q Cavanaugh, M Jiang, ...
Cell reports 26 (2), 447-459. e4, 2019
602019
Small-angle X-ray scattering: a bridge between RNA secondary structures and three-dimensional topological structures
X Fang, JR Stagno, YR Bhandari, X Zuo, YX Wang
Current opinion in structural biology 30, 147-160, 2015
502015
Molecular dynamics investigations of the α-helix to β-barrel conformational transformation in the RfaH transcription factor
JB Gc, YR Bhandari, BS Gerstman, PP Chapagain
The Journal of Physical Chemistry B 118 (19), 5101-5108, 2014
442014
Exploring the diffusion of molecular oxygen in the red fluorescent protein mCherry using explicit oxygen molecular dynamics simulations
CK Regmi, YR Bhandari, BS Gerstman, PP Chapagain
The journal of physical chemistry B 117 (8), 2247-2253, 2013
422013
Real‐time crystallographic studies of the adenine riboswitch using an X‐ray free‐electron laser
JR Stagno, YR Bhandari, CE Conrad, Y Liu, YX Wang
The FEBS journal 284 (20), 3374-3380, 2017
282017
Synchronous RNA conformational changes trigger ordered phase transitions in crystals
S Ramakrishnan, JR Stagno, CE Conrad, J Ding, P Yu, YR Bhandari, ...
Nature communications 12 (1), 1762, 2021
242021
Visualizing RNA conformational and architectural heterogeneity in solution
J Ding, YT Lee, Y Bhandari, CD Schwieters, L Fan, P Yu, SG Tarosov, ...
Nature communications 14 (1), 714, 2023
222023
Topological structure determination of RNA using small-angle X-ray scattering
YR Bhandari, L Fan, X Fang, GF Zaki, EA Stahlberg, W Jiang, ...
Journal of molecular biology 429 (23), 3635-3649, 2017
172017
Modeling RNA topological structures using small angle X-ray scattering
YR Bhandari, W Jiang, EA Stahlberg, JR Stagno, YX Wang
Methods 103, 18-24, 2016
132016
Cooperative structural transitions in amyloid-like aggregation
T Steckmann, YR Bhandari, PP Chapagain, BS Gerstman
The Journal of Chemical Physics 146 (13), 2017
122017
In J, Stein-O’Brien G, Kong X, Xie W, Zachos N, Maegawa S et al: Aging-like Spontaneous Epigenetic Silencing Facilitates Wnt Activation, Stemness, and Braf (V600E)-Induced …
Y Tao, B Kang, DA Petkovich, YR Bhandari
Cancer Cell 35 (2), 315-328, 2019
72019
Structural propensities and entropy effects in peptide helix-coil transitions
IE Chemmama, AC Pelea, YR Bhandari, PP Chapagain, BS Gerstman
Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 86 (3 …, 2012
62012
Transcription factor expression repertoire basis for epigenetic and transcriptional subtypes of colorectal cancers
YR Bhandari, V Krishna, R Powers, S Parmar, SJ Thursby, E Gupta, ...
Proceedings of the National Academy of Sciences 120 (31), e2301536120, 2023
22023
Abstract A008: DNA methyltransferase 3A promotes inflammation-associated gastric cancer growth and presents a therapy target for gastric cancer
A Huber, C Dijkstra, Y Bhandari, H Easwaran, S Baylin, M Ernst, ...
Cancer Research 82 (23_Supplement_2), A008-A008, 2022
22022
Lattice model simulations of the effects of the position of a peptide trigger segment on helix folding and dimerization
YR Bhandari, PP Chapagain, BS Gerstman
The Journal of Chemical Physics 137 (10), 2012
12012
Free-energy landscapes and thermodynamic parameters of complex molecules from nonequilibrium simulation trajectories
PP Chapagain, BS Gerstman, YR Bhandari, D Rimal
Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 83 (6 …, 2011
12011
Tu1210 ABERRANT PDX1 EXPRESSION FACILITATES COLORECTAL CANCER CELL PROLIFERATION THROUGH SUPPRESSING CDX2
Y Mao, Y Bhandari, H Easwaran
Gastroenterology 166 (5), S-1283, 2024
2024
Determining structures of individual RNA conformers using atomic force microscopy images and deep neural networks
MFS Degenhardt, HF Degenhardt, YR Bhandari, YT Lee, J Ding, ...
Research Square, 2023
2023
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