BASys: a web server for automated bacterial genome annotation GH Van Domselaar, P Stothard, S Shrivastava, JA Cruz, AC Guo, X Dong, ... Nucleic acids research 33 (suppl_2), W455-W459, 2005 | 377 | 2005 |
Carbon and sulfur cycling by microbial communities in a gypsum-treated oil sands tailings pond E Ramos-Padrón, S Bordenave, S Lin, IM Bhaskar, X Dong, CW Sensen, ... Environmental science & technology 45 (2), 439-446, 2011 | 224 | 2011 |
Assessing species biomass contributions in microbial communities via metaproteomics M Kleiner, E Thorson, CE Sharp, X Dong, D Liu, C Li, M Strous Nature communications 8 (1), 1558, 2017 | 213 | 2017 |
Metagenomics of hydrocarbon resource environments indicates aerobic taxa and genes to be unexpectedly common D An, SM Caffrey, J Soh, A Agrawal, D Brown, K Budwill, X Dong, ... Environmental science & technology 47 (18), 10708-10717, 2013 | 207 | 2013 |
PlasMapper: a web server for drawing and auto-annotating plasmid maps X Dong, P Stothard, IJ Forsythe, DS Wishart Nucleic acids research 32 (suppl_2), W660-W664, 2004 | 158 | 2004 |
Methanotrophic bacteria in oilsands tailings ponds of northern Alberta A Saidi-Mehrabad, Z He, I Tamas, CE Sharp, AL Brady, FF Rochman, ... The ISME journal 7 (5), 908-921, 2013 | 130 | 2013 |
Methanogenic biodegradation of two-ringed polycyclic aromatic hydrocarbons C Berdugo-Clavijo, X Dong, J Soh, CW Sensen, LM Gieg FEMS microbiology ecology 81 (1), 124-133, 2012 | 116 | 2012 |
An integrated pipeline for annotation and visualization of metagenomic contigs X Dong, M Strous Frontiers in genetics 10, 999, 2019 | 107 | 2019 |
Methanogenic toluene metabolism: community structure and intermediates SJ Fowler, X Dong, CW Sensen, JM Suflita, LM Gieg Environmental microbiology 14 (3), 754-764, 2012 | 104 | 2012 |
Effect of sodium bisulfite injection on the microbial community composition in a brackish-water-transporting pipeline HS Park, I Chatterjee, X Dong, SH Wang, CW Sensen, SM Caffrey, ... Applied and environmental microbiology 77 (19), 6908-6917, 2011 | 102 | 2011 |
A shared core microbiome in soda lakes separated by large distances JK Zorz, C Sharp, M Kleiner, PMK Gordon, RT Pon, X Dong, M Strous Nature communications 10 (1), 4230, 2019 | 97 | 2019 |
Compositions of microbial communities associated with oil and water in a mesothermic oil field Y Kryachko, X Dong, CW Sensen, G Voordouw Antonie Van Leeuwenhoek 101, 493-506, 2012 | 97 | 2012 |
Fast and simple analysis of MiSeq amplicon sequencing data with MetaAmp X Dong, M Kleiner, CE Sharp, E Thorson, C Li, D Liu, M Strous Frontiers in microbiology 8, 1461, 2017 | 93 | 2017 |
Comparative analysis of metagenomes from three methanogenic hydrocarbon-degrading enrichment cultures with 41 environmental samples B Tan, S Jane Fowler, NA Laban, X Dong, CW Sensen, J Foght, LM Gieg The ISME Journal 9 (9), 2028-2045, 2015 | 92 | 2015 |
Metagenomic analysis of an anaerobic alkane-degrading microbial culture: potential hydrocarbon-activating pathways and inferred roles of community members B Tan, X Dong, CW Sensen, J Foght Genome 56 (10), 599-611, 2013 | 90 | 2013 |
Environmental Breviatea harbour mutualistic Arcobacter epibionts E Hamann, H Gruber-Vodicka, M Kleiner, HE Tegetmeyer, D Riedel, ... Nature 534 (7606), 254-258, 2016 | 87 | 2016 |
Microbial community succession in a bioreactor modeling a souring low-temperature oil reservoir subjected to nitrate injection CM Callbeck, X Dong, I Chatterjee, A Agrawal, SM Caffrey, CW Sensen, ... Applied microbiology and biotechnology 91, 799-810, 2011 | 80 | 2011 |
Phoenix 2: a locally installable large-scale 16S rRNA gene sequence analysis pipeline with Web interface J Soh, X Dong, SM Caffrey, G Voordouw, CW Sensen Journal of biotechnology 167 (4), 393-403, 2013 | 73 | 2013 |
Microbial community and potential functional gene diversity involved in anaerobic hydrocarbon degradation and methanogenesis in an oil sands tailings pond D An, D Brown, I Chatterjee, X Dong, E Ramos-Padron, S Wilson, ... Genome 56 (10), 612-618, 2013 | 68 | 2013 |
Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities M Kleiner, X Dong, T Hinzke, J Wippler, E Thorson, B Mayer, M Strous Proceedings of the National Academy of Sciences 115 (24), E5576-E5584, 2018 | 62 | 2018 |